GgaINT0094721 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NTQ4]
Coordinates
chr2:105756063-105756907:+
Coord C1 exon
chr2:105756063-105756226
Coord A exon
chr2:105756227-105756772
Coord C2 exon
chr2:105756773-105756907
Length
546 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
GATTTCTTTTTCTGTGGCAGCAA
3' ss Score
7.06
Exon sequences
Seq C1 exon
ACACACTGGTGATGAAAATAATTGCATCAGATGCCGATGAACCAAATCACTTGAACTCTAAAATTGCCTTCAAGATAGAGAGTCAGGAGCCTTCAGGCCAGCCAATGTTTATTATGAATAAATATACTGGAGAACTCCATCTAGCAAATTATCTTGACAGAGAG
Seq A exon
GTATCATTTCTGTTTCCCAAGTCAAATAACACAATGCTGTTGTGTATCTTTAACAGTGATATGATGCCAGGGTGCATGGGAGGGTAGGTAAGCGAGGTGGGAACAGCATGGGAGGAGGGGAGAGAGAGAAAAAGTGTGCCTTTTGCAAAAAAGAAGGAGAGGAAGGAAGGAAGGAAGGATGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGTAGGAAGGAAGGAAGGAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAAGAAAGCAAAGAAAAATTTAAATGGGAAAATATATATTTTTATATGTGCTACAATGAAACACCAGAGAGAAACTCCTGTATAAAGAAACAGTGGCAAGACATTAGTATTTATATTTTATAAGATGTAGAGATTCTTGTAACAGGATTTCTTTTTCTGTGGCAG
Seq C2 exon
CAACACAGTAGTTACACTTTGGTTGTGAAGGCATCAGACCGGGATGGAGCAGCAGATGGAATTTCATCCCTTTGTAACTGTCATGTGAAAGTTATTGATGTCAATGACAACTTCCCAACTCTTGCTCAAAGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017398:ENSGALT00000036805:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.1=100)
A:
NA
C2:
PF0002812=Cadherin=PD(31.6=68.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGTGATGAAAATAATTGCA
R:
GCTTTGAGCAAGAGTTGGGAA
Band lengths:
294-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]