GgaINT0094782 @ galGal3
Intron Retention
Gene
ENSGALG00000011262 | KCNH8
Description
NA
Coordinates
chr2:35538119-35538512:+
Coord C1 exon
chr2:35538119-35538174
Coord A exon
chr2:35538175-35538270
Coord C2 exon
chr2:35538271-35538512
Length
96 bp
Sequences
Splice sites
5' ss Seq
AATGTGTAT
5' ss Score
-5.65
3' ss Seq
CATGCTTTGCTTTTATGTTGTTC
3' ss Score
-1.99
Exon sequences
Seq C1 exon
GGCTTGATGGTACATAAGAAAACATCATGTCTGCAGACAGATGGGACTTTTTTAAT
Seq A exon
GTGTATATCTATTTGTGTCTCCCTACAAACCTGAAAGAGGTATTATGTCAAATGGCCTTGAATTCAGACTGTAATTCATGCTTTGCTTTTATGTTG
Seq C2 exon
TTCTACAGATAGTAACTTCATCCTTGCAAACGCACAGGTGGCTAAGGGATTCCCTATTGTTTACTGCTCAGATGGCTTCTGTGATCTTGCTGGATTTGCACGAACTGAAGTCATGCAGAAGAGCTGCAGCTGCAAATTTTTACTTGGTGCTGAAACAAATGAGCAGATGATCCTTCAGATTGAGAAATCCTTGGAAGAAAAGGTAGAATTCAAAGGAGAAATCATGTTCTATAAAAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262:ENSGALT00000018380:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(5.0=31.6)
A:
NA
C2:
PF134261=PAS_9=FE(68.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACAGATGGGACTTTTT
R:
AGCACCAAGTAAAAATTTGCAGCT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]