GgaINT0095172 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:321804-322229:+
Coord C1 exon
chr2:321804-321938
Coord A exon
chr2:321939-322026
Coord C2 exon
chr2:322027-322229
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCGGCACCGGTGCCATGCAGGCA
3' ss Score
2.7
Exon sequences
Seq C1 exon
GAAGGGATGTGACGGTGAATGGGGTTTCAGCGCGTCCCCCTAAAGTGAACAGTGGGTTCGGGCTGACGCTGCAGCGCGCCGGCATCTTCCTGCTGCTGCTGTCCCGCCTGGGGCTGGCGGTGCTGTGGGACGGAG
Seq A exon
GTGAGACCAGGGGATGTGACAGCTGTGTGGGGATGTGGCACCCAGTGTGGGGACAGCACCCGGCTCACCCGGCACCGGTGCCATGCAG
Seq C2 exon
GCACGCGGGTGTACATCCGGCTGCAGCCGCAGCACCGGGGCCGCGAGGTGGGGCTCTGCGGGAACTTCGATCGTGACGCGGAGAACGACCTGGCCAGCCAGCAAGGTGTGCTGGAACCCACGGCCGAGCTCTTCGGCAACTCCTGGAGAGTCACCCTGCTCTGCCCTGAGGTGGACGGCACGACCGTGCAGCACCCCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(37.2=100)
A:
NA
C2:
PF0009420=VWD=PD(29.8=52.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCCCCTAAAGTGAACAG
R:
CGTCACGATCGAAGTTCCCG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]