GgaINT0095185 @ galGal4
Intron Retention
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:420781-421102:+
Coord C1 exon
chr2:420781-420940
Coord A exon
chr2:420941-421047
Coord C2 exon
chr2:421048-421102
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGGAACATTTCTTCACTCAGGGC
3' ss Score
4.88
Exon sequences
Seq C1 exon
GTGCCAGACGGAGCCGTGCCAGGAGTGTGAGCACCAGGGCCGGAGCCGTGCGCAGGGGGATCGCTGGCGCTGGGGGCCCTGCCATGTCTGCCAGTGCCTGCCTGGCCCTGAGGTGCGCTGCTCGCCATACTGCGCCCGCAGCGCCGTGGGCTGCCCACAG
Seq A exon
GTGAGGTACCAGGGGCTGCACTGCGCTCTCCGTGCATGAAGTGGGATGTGGCAGTGCCATCGTGGTACCCGTGGTACCTCTGGCAACAGGAACATTTCTTCACTCAG
Seq C2 exon
GGCCAGGTGCTGGTGGAGGGAAAGGGGGATTCCTGCTGCTTCTGTGCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000007871:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCGTGCCAGGAGTG
R:
CTGTGCACAGAAGCAGCAGG
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]