GgaINT0095186 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:327501-327810:+
Coord C1 exon
chr2:327501-327555
Coord A exon
chr2:327556-327643
Coord C2 exon
chr2:327644-327810
Length
88 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
AGAGGTTGTCCATGCTGCAGGTG
3' ss Score
3.36
Exon sequences
Seq C1 exon
GGCCAGGTGCTGGTGGAGGGAAAGGGGGATTCCTGCTGCTTCTGTGCACAGATAG
Seq A exon
GTGAGCCCGGTGTTGGGATCTGGGGGGCACAGCCCTGCTGGGTGCCCGCTGGCACCTGGGTGCTGCACAGAGGTTGTCCATGCTGCAG
Seq C2 exon
GTGACAATGTGACGGCCATCCCCACGGCACTGACAATGGAGCCCCCCAGCACCATGCCAGGAGAGCCCTCTGACAGCCCACTGCCCATGTTCCCGCTGCCTTCCCCAGGCGGTATGAGAGCTCTGCTCACAGTGTGCTGTGTCCCCACACCTCCTCCCTCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCTGCTGCTTCTGTGCA
R:
CAGCACACTGTGAGCAGAGC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]