GgaINT0095187 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:327644-328322:+
Coord C1 exon
chr2:327644-327810
Coord A exon
chr2:327811-327844
Coord C2 exon
chr2:327845-328322
Length
34 bp
Sequences
Splice sites
5' ss Seq
GGGGACAGG
5' ss Score
-7.75
3' ss Seq
GGGTCACCCCCTCCCTGCAGGGG
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTGACAATGTGACGGCCATCCCCACGGCACTGACAATGGAGCCCCCCAGCACCATGCCAGGAGAGCCCTCTGACAGCCCACTGCCCATGTTCCCGCTGCCTTCCCCAGGCGGTATGAGAGCTCTGCTCACAGTGTGCTGTGTCCCCACACCTCCTCCCTCTCCTGGG
Seq A exon
GACAGGACCCTGTGGGGTCACCCCCTCCCTGCAG
Seq C2 exon
GGGGAAAGAGCCAGCTCCATGCCTCCAAACCCACTCCCTCTGCCCACAGACCCCTGCTACAGCCCCTTGGGCATCGCCTCCTTGCCCGATAGCAGCTTCACCGCCTCAGCCGAGCAGCAGCAGCACCCAGCCCGTGCTGCTCGTCTGCACCACGTCTCCCCGGGGCTGGAGTTGCAGGGCTGGGCCCCCCCAGCTGACACCGTCCCTGGTCTGCCTTCCCACCTACCCTTCCTGCAGCTGGACCTGCTGCAGACCACCAACCTCACCGGTGGGTGCTGTGTGCCACGTGGCATTGGCACTGCCACCACAGTGGGCACTACGCCGGTGCTGGTGCCAGAGCATGCAGCTGCATGCCAACAAATTCCACATCTCCCCCAACAGGGGTGGTGGTGCAGGGGGCCGGGGCTGGGGATGCCTTCATCACTGCCTTCCAGCTGCAGTTCAGCACTGATGGGAACCGCTGGCACAACTACCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCTCCTCCCTCTCCTG
R:
GTGAAGCTGCTATCGGGCAAG
Band lengths:
123-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]