GgaINT0095204 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:335378-335700:+
Coord C1 exon
chr2:335378-335523
Coord A exon
chr2:335524-335605
Coord C2 exon
chr2:335606-335700
Length
82 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACAGCGCCATGTCCCTGCAGAAC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTAAGGAGCCAGGGGTCTGCCCTCCCGGCAAGCAGTGGCAGGCATGCGCCCAGGGTGCAGCCTCGTGCGCAGAGCTGAGCGCGGCCCCCCCAGCTGATGGGAGCTGCCACCCCGGCTGCTACTGTCCCCCGGGGGCACTGCTCCTG
Seq A exon
GTGAGTGGGGGTGATGGTGTGGGGAAGGGGGGTGCTCTGTGCAGGCACCCCCGAACAGCAGCACAGCGCCATGTCCCTGCAG
Seq C2 exon
AACAATGAGTGTGTGGCTGAGGCGGCGTGTCCCTGTGCCATGGATGGTGTCCTCTATCAGCCCGGGGATGTTGTGCCACAGGGCTGCCACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(4.5=4.1),PF0182612=TIL=PU(79.2=85.7)
A:
NA
C2:
PF0182612=TIL=PD(17.0=28.1),PF0009313=VWC=PU(36.4=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGAGCCAGGGGTCTGC
R:
CCTCAGCCACACACTCATTGT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]