GgaINT0095224 @ galGal4
Intron Retention
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:436995-437397:+
Coord C1 exon
chr2:436995-437183
Coord A exon
chr2:437184-437250
Coord C2 exon
chr2:437251-437397
Length
67 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CACCCTCTGCTCTGCCACAGCTG
3' ss Score
8.6
Exon sequences
Seq C1 exon
GGGCCGAACACTGCACGTGGGGCACATGGAGCCCCTGCTCCCGGAGCTGTGGCACCGGCCTGGCCTCTCGGGAGGGCTCCTGCCCTTGCCCATTTCCGGGTCCCCCTGGTGCCCTCTGCAATGCCAGCACCGGAGATGGAGCCAGAGCTCACCGGGAGGTGCAGGCCTGCTACCTGCGCCCCTGCCCAG
Seq A exon
GTAGGGGATCGGCACAGGTGTGGGGCAGTGGGGCCATACCCACTCCTCACCCTCTGCTCTGCCACAG
Seq C2 exon
CTGAGTGTTCCTGGAGTGCCTGGAGCTCCTGGGGCGGCTGCTCCTGCAGCTCCCCACTGCAGCACCGGTACCGGCACCGGCATGGCACCGGCCTCTGCGTGGGGCTGGACGTGGAGCTGCACCCCTGCAACACCTCGGGATGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000007871:84
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=90.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCCTTGCCCATTTC
R:
AGTGGGGAGCTGCAGGAG
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]