GgaINT0095225 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:341999-343163:+
Coord C1 exon
chr2:341999-342145
Coord A exon
chr2:342146-343032
Coord C2 exon
chr2:343033-343163
Length
887 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
CCCCACACCTATCCCCACAGAAT
3' ss Score
8.31
Exon sequences
Seq C1 exon
CTGAGTGTTCCTGGAGTGCCTGGAGCTCCTGGGGCGGCTGCTCCTGCAGCTCCCCACTGCAGCACCGGTACCGGCACCGGCATGGCACCGGCCTCTGCGTGGGGCTGGACGTGGAGCTGCACCCCTGCAACACCTCGGGATGCTTTG
Seq A exon
GTGAGGACGGGGATGTTGGAGATCCTCCTGCCCCAGCACAGCCCTGCCCACATCCTGCCCATACTGCGTGCTTCCTGCCCATCTCGGTGACACGTGGGGTGCACCTGCCCATCCTGTGTGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATGACCCTTCCTGCCACCATACACTCCCTGCCCCCTTTATGCCTATCCCACTGTGCACTGGGATCTCCCAGCCCCAACCCCACACCTATCCCCACAG
Seq C2 exon
AATCCAGCTGTGAGCCCCCCTTTGAGTTCCAGCCCTGCAGCCCTCCCTGCGCCCGGCTCTGCTCCACGCTGCAGCACCCGGAGCTGTGCCCAGCCCAGTCCCACTGCCTGCCTGGCTGCTTCTGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=86.0)
A:
NA
C2:
PF0182612=TIL=PU(84.2=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGTTCCTGGAGTGCCT
R:
CAGAAGCAGCCAGGCAGG
Band lengths:
271-1158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]