GgaINT0095227 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:343546-343808:+
Coord C1 exon
chr2:343546-343670
Coord A exon
chr2:343671-343761
Coord C2 exon
chr2:343762-343808
Length
91 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AGCTTTTTGTTCCCTCACAGCGT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGGCTCCTGGAGCAGCGCAGTGCCTGTGTGCCCCCCGAGCAGTGTGACTGCCTGCACACCAATGAGTCAGGCGACCTGGTGACACTGTCCCCAGGGGACATCATCCTGCTGGGATGCAAGGAGTG
Seq A exon
GTGAGTGGGGCTGTGGTGCACCAGGGGGGTGTCTCCCACGTGAGGGGCCGGGGACAGCACCGAGAGTTCAAAGCTTTTTGTTCCCTCACAG
Seq C2 exon
CGTGTGCCAGGACGGAGCCCTGCAGTGCAGCAGTGAAGGCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.0=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGAGCAGCGCAGT
R:
CCTTCACTGCTGCACTGCA
Band lengths:
161-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]