GgaINT0095229 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:344008-344465:+
Coord C1 exon
chr2:344008-344229
Coord A exon
chr2:344230-344303
Coord C2 exon
chr2:344304-344465
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GTGACACCAACATCCCATAGAGC
3' ss Score
4.55
Exon sequences
Seq C1 exon
GGCTGCTCCCACTGAGCCCCTGGTCGGAGTGGACGCCTTGCAGCACCTGCCTGCCCCTGTTCCCATCCCACCTGGGGGACGTCACACCCCACGTGTCAGTGCAGCACCGCTACCGAGCCTGCCTGGACCCACAGAGCGGCCAGCCCTGGTCTGGAGACACAGCTGTGTGCTCAGCTGAGCTGCAGCAGCAGCGGCTCTGCCCAGACCCCGACATCTGCCAAG
Seq A exon
GTACCACAGTGCTGCAGGGCATGGGGGTGAGGGGACCCCTGTGTCCCCCTCTGAGTGACACCAACATCCCATAG
Seq C2 exon
AGCTGTGCCTCTGGAGCCCCTGGGGGCCGTGGGGGCCCTGCCAGCAGCCCTGCAGTGGGAGTTTCCGCCTGCGGCACCGCCACCTCCAGCGCCTGGCGGGCAGCGGGCAGTGCCAGGGGGCACAAACCCAGAGCGAGAGCTGCAACACAGCCGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=WD(100=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCCGACATCTGCCAAG
R:
GTGTTGCAGCTCTCGCTCTG
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]