GgaINT0095477 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:41559475-41560468:+
Coord C1 exon
chr2:41559475-41559507
Coord A exon
chr2:41559508-41559962
Coord C2 exon
chr2:41559963-41560468
Length
455 bp
Sequences
Splice sites
5' ss Seq
CGAGTTTAT
5' ss Score
-10.95
3' ss Seq
ATGCTTTTTCCTCTCTGCAGCAT
3' ss Score
10.33
Exon sequences
Seq C1 exon
GAGCAAGTCCTTATGGGATTGTTATTAAGACGA
Seq A exon
GTTTATTCTGAAGTGTTCAGGTGGATCCAGTTCCTAAATGCAACCTAGATTATAGAAGGGAGGTAGAAGACCTTGATAAGTGGAATATTACTGTAATTAAATGATAAAGCATGCAATCTCACCCCCAAAGTCATAAGTAAAATGTTTGGTGGGAGGAAGGTGAAACTTTTTCTGGATAAATACTGTCAGATATAGAAGATTCTCAAGACATTTTTAATACTTTCTTTAATAAGGTTGTTTTCATTAGAATTCTTCATTTAACTTCCCAAAAGATAATATTACAGCTATCATGTAGCATGTTTAAATGGTATGCTGTAGACTTAAAGCTCATGCCCAAACGTAAAATAATGAACGTCATTGACAAGGTTGCAGTTTTTCTTTAGCTTACATTCAAAACCAGGTCTTGGATATAGGTGTCTCAGCAGCTCTTTTATTATGCTTTTTCCTCTCTGCAG
Seq C2 exon
CATTCGCAAAACGATATGCTGATGTTATTTTCCTTATTGATTCCACGGAGAACATGAAGCCTTCAACATCTGAAAGGGTAAAACACTTCATCTCCCAAGTAGTCCGACAACTAGATGTTGGGCTTAACAAGTATAGGATTGGCCTAGCCCAGTTTAGTGGCATAGGAAAGGTGGAGTTTTTACTGAACACGTATGAAAACAAAGAAGAGGTGCTTGATCACATTCAGCGCAGCATTGCATTCACTGGAGGCTCACTACAGAATGAAAGTGCCATAGAGTTTTTGAAGAAAACCTTTTTAATGAATGGTGCTGGAAGTCGGCTCAGTGAAGGCACTCCACAGGTTGTTGTGATCTTCACATCTTCTGGATCCAGAAACAGTATCATGGAGGAAGCCTGGGTGTTAGAAGACATGGGCGTAAAAGTTACCTTAGTTGATGTTGAATACTTTGACAAGATAGAAGCAACGGTGAGAGAACCCTCTAGCAAGGTTTATCAGATTTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567:ENSGALT00000018866:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009223=VWA=WD(100=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTATGGGATTGTTATTAAGACGA
R:
CCGACTTCCAGCACCATTCAT
Band lengths:
346-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]