GgaINT0096079 @ galGal4
Intron Retention
Gene
ENSGALG00000011176 | SCRN1
Description
secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
Coordinates
chr2:34387747-34391711:-
Coord C1 exon
chr2:34391509-34391711
Coord A exon
chr2:34387942-34391508
Coord C2 exon
chr2:34387747-34387941
Length
3567 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATATGTGGCTCTTTCTGTAGAGG
3' ss Score
7.1
Exon sequences
Seq C1 exon
ACTTGGCCTAGAAAGAGGTTCAACAGCCAAGGAAGCATTGGATGTAATAGTTGCTTTGTTGGAAGAGCATGGGCAAGGAGGAAATTACTATGAAGACGCAAGTTCGTGCCATGCTTTCCAAAGCGCATTTCTGATTGTGGACAGAAATGAAGCCTGGGTACTGGAGACATCTGGAAAGTACTGGGCAGCTGAAAAAATCACAG
Seq A exon
GTCAGTTCATCACTCACAGCAAGCCTAGTTCATAATAAATGTTTATTATTGCTTTGGAATTGTTTTGGAAGAATTGTCTTAAAGTACCCGGGTTTAAGTAATTCATGCAAGTGTTTGATTAAACCATCAGTTTCAGTCTTTTTTTTTTTTTTAATTTTTCTGTTACTTTCAGCTTTTAGGCATTGATTTCCATTGGTTAATGTAATAGCATTTTCTGTCAGGTTGGAGAATATGTTACCTGTATACGTAAGCTACATAATCATTATGTTTACGTTTTTATGTTTGATAAGTGTTATGTTTTCCCAGGTTTATTTACTGCTTGGAATGTGTCAAGAATCTTTTCAGTGTAGTTAATGCAGAAATTATTATTACTAATCTGAAATACTAAGAGGCTAGGATAAGCACTAATAGCTTTGAGAAAAGGGCTTACATGTAGGTGGTTGTCTTAGTTTCGGCTGGGACAGAATTGCTTTCCTCAGTGTTTGGTACGTTGCTATGTTTTGATTCTATGAGGAAGAACAATGTTGATAACCCACTGATGTTTATAGTTGATGCTAAGCAGTGTTGTACAGAGCCAAGGCATTCACAGTGAAGGGCCAAAGGAACTGGGATTGAACAGGATTAGGACAGCTGACTTAAACTGACTGAAGAGATATTCCATATGATATGACATCATGCGGAAGGAGTTTTGAAGCAGATGAATTGGGCTCTCTTCTGCTGTTTAGGGTCTAGCTGGGCATCGGTTGGCAGGTGATGAGCAATTCTTTGTGCATCACTTGTTATGTACATTTATATATCTATCTATATATGTAGTCATAATTATTTTCCTTTTTCTCTATAAGTAGTTTCCCTATAAATAGTTTTATCTGAACCCCGTAAGTTCTACTTTGCTTTTTTGATTCTCTCCCCCATTCCACTGTGAGGGGGGAGAATGAGTGAACGGCTGTGTGGTTATGAGCCACCTGCTGGGTTAAACCACAGCAGTGGTAAACTGAATGGTCTGCTCCTGGTTGCTTTACTGCAATAGATATAGGCCCCTCATATTCCTATTTCTTATCTAACACTGAAGGACAAAAGTTTTTTTTCCTCTTTAATAGGTCATTTATTTTTTCTCTGTGTGTGAAGCCAGAGCTTCCATGGTGACTTCTAAATTTCATTAACTTTGTGGCTGCACTTACTTAAAACTTTGTAGAATATATGTGCTGCGTTAATATACTAAGATTGTGTAAGGCATGTATTTTTTTGTGATCTGGGTTATCGTTTTTAGTTTTGAAGGGATTTTTATTTTTGTAAGAAAATAAATAAATAAATAAATAAATAAATAAAATAAATAAAAATTACACACGCATTTGAATGAATTCAAAAAAAATTCAAATGGTTTAAGAGGATTTTTATCATCTCAGCTTTGAGCTATGACACATCCAGTTAGTTCTCTTTTCAGTACCCCTTCATTGAAAGTAGGAGGTAGCAGATACAGAGAGGAGGAACGTTTAATGCTATTGAATGTACGAAAGCAAAGAAGTAACACCTGGCTGTATAATGTTGTATGGTGGCCTGTTGTCAGTTCATACTATTAAATATGAATCAGCTTACTTTGCAGGGATGATTTGCCGAGCAAAGCTTGCATTTCAAGAATATCTACAAAATGGAGGAAACCTTCCAGTGCAAACAGGTCCCAAACCTAGAAGAGGGAAGACTGATAATGCTACCCTGATAAGATCCAAATTTTGGACAGCTGTCAGCTGTTACTAGGGTTATGAAATGACAACCGTCTTCTACTGACCTACCTGGGTGCTGTTTGAAGTGTTTTTCACTTAACCTTTTTAGCTACATCAGCAATATATAACCTTCGTGTGCTACTTCCCAGCAAGTAAACTGTTGACTTCGTCTGCAGCTTGTATCTTTTTGAAGTGGTACTGCAACTCTGTTCTCATTCTTACCAGCACGTTTCTCTTCCAGGGGTCCTTGTGAGCAGCAGATTAAATTGACTAGTTTCCATCTCCTTCCTGTAGTATGCTGAGGCTGACAGGATGAAAGGGGATGGCTGCTGGCTATGGAAGAACCGTGTATTTCATACTTTGTTCAGGAGGTTCTTTTCTGCAGCCATATTTATGCCTTGAAAAATGAATGTGTGGATGCTGTTAAAACAGGGGAAGTGTCATTTCTCAGCAGTGGGAAGGGATTTTTTTCTTCCTGACTCTCCTAAGAATTATTCTTTCCTAATTGCTATAGTTCTGTAAAGCTTATAACACATTTATCAAGCAACTTTTTGGCAGTAATGTAAGGATAAACACTTTAAAATTCATCCTGTTGCTAATCTTCAGTCTGAATAGATAAATGAATCTGCATGATAAACTTGTCCCCCTCAAAGGATCAAAACCATGAAATGCTATTTTACATCAGTTACTAAGTATAATAGTTAAAGAGCTTTTAATGAGTAGCTTGGCTAGCTTGACATGAACTCAAATGTTTTTATCCTAGAAGTCAAGAAAATTCTCTGGAAGGCATGCTGCTTGGAAGCATGAACACACTGTCAGTGAGCTAGTACAAATCAGAACTGAATGGCAGTAACTTTCTCAGACTTATGCACATAACGTCCTAATGTAGTTCTTCCTGATTATTTAAATAGAACGTATGTGACATTAGAAAGGCAAGCTTACTTTTGTGGAAGGCAGTATTAATTAATAACTTTTAGAAATACTGCTTTGGTTTCTGTTTAAGAAAAAGTTTGTGCCAAATTCCAGAATCTGGTTTTATTTTAGTTAATGGATTTGCTTTATCAGCTCTTTCTTTGGCTTCCTATGCGTTTACTTTATTCTCTCTGAGGCGTATCTGCAGCTGGCACCGTTTGTTAGTCATGCTGTAGCTATATGGATACGAGCACTGCAGTGTTTTTGAGAAAAGCAGTTAAAAAAAACAAAACAAACACTTGAATATTCTTTGAAGGTTGCTTATGCTTCCTTTTTATTTCATGCCATTTTAAAATTTAAGATTAAAAATGAACTTCTTTAACTTAAGCCTATCTTTTGCTGCTTTCAATAAAATTATTTTTCAATTGTAAAGCTTAAAGCAATCAGTAAGCTTGAAAAACATTTTCCAAATTATATTTTCAGTTTTAAGGTAGGAGACAAAGAGGGTTTATTAATCTGAATGAAGCTTGGCTGACATATAGTTTTGAATCAAATTAGGCCTCAAGTCTTATTGCAGCTGTTCCACTGGACAGAAAAACAAGGCTGGCATCGTCTCAGTCTTCAGGTATGCCTCGTGGCATTTGGAGACCTCTTTTACTTCATGGTCACGTATGTGGAGTATGGAGGAGGTGTGAAACTGCTGTCTGACCGAACAGCACTATTAATCACGTAGCAGTGTAAATATCTTAATAGGGCAGCGAATTGAGCTTTGCAACCTGCAGTGAATGGTAACTGTATGTGTAATTATGCAGTCATATTAAATGTACATCCTAACTGATGCTTTCATTTGTTTCCTAATTGCAATTGCTTGGTCCTTCTAGCAACTCCCATAAGAACTGTATTAATACTCTCTTGTGATATGTGGCTCTTTCTGTAG
Seq C2 exon
AGGGGGTGAAATGCATTTGCAATCAGCTTTCACTAACTACAAAAATTGATGCTGAGCATCCTGAACTAAGGGATTACGTGAGAAGTCAAGGCTGGTGGAATGGAGACTCAGACTTCAATTTTTCTGAAGTGTTTTCTCTTGCTGCTGACCATTTAGCCTGTTGTTCTGGCAGGGAGAGCCTGGAAAAGCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011176:ENSGALT00000037800:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(30.5=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(25.6=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]