RnoINT0131855 @ rn6
Intron Retention
Gene
ENSRNOG00000009636 | Scrn1
Description
secernin 1 [Source:RGD Symbol;Acc:1560999]
Coordinates
chr4:84695691-84698509:-
Coord C1 exon
chr4:84698307-84698509
Coord A exon
chr4:84695886-84698306
Coord C2 exon
chr4:84695691-84695885
Length
2421 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGGCGTTGGGCTCTTTGCAGAGG
3' ss Score
4.71
Exon sequences
Seq C1 exon
GCTTGGTTTAGAACGAGGGACAACAGCTAAAGAAGCCTTAGACATCATCGTCTCCTTATTGGATGAGCATGGACAAGGTGGAAATTATTATGAAGATGCCCATTCCTGCCATAGCTTCCAAAGTGCATATCTGCTGGTGGATCGTGATGAAGCCTGGGTGCTGGAGACTGTAGGGAAGTATTGGGCTGCTGAGAGAATCACAG
Seq A exon
GTGAGGGGGTACAGAATCTGGAGTTTTGAGGGTAGGACGGGCTGAGAGGATGTTGGTCAGATATGCTGGGCTGGCCCAGAAGAGCTGTGCTGCTGTGCAGTATCCTCTGTGCATCCCCTTCAGGCTTAGGCATGCCTTTCCTGCCAAGTATCTTAATTAATTCTACACTTCCTGCTTGCTTTTTGGACATCTCTAGTTGTAACTATAAACCATGGCTATGGGTTGGGCAAGAGAACGAGGAGTCTTGAATCATAGTAAGTCAACAAACCTCTTGTCACTTCCATAGCTGCTAAAGCTTAGACTCATCCTCTAAAATAGAAACTTGGGTCTCTAGGGACTATTGAGTGCCACTGGGTGCCAACCAGGTCACATGTCTGAAACTCCATCTCTAGGAGGGCATCATGGACTTGGCCATCTACATGGGAAGCGCCCCTCTAGTTCATACGGCTTCTTGTTTCTGGTTCAGTGTGGAGACAGTGTACCACCACTCCAGGGCTCTCCCTCAGACTCCCAATGGGATAGAGTTCTAGAATTGGCTAAAGGGCTTCCAGAATTCCTACATAACTCCACAGGAAACTGGTCATTGGCGGTCCCCTTGCACTCCCTGCGACAAGATGATAAATACATACCACATGCATCAGCAGACTCCCTCACCAAGTTCTGGGGATGTCCGGCTAGTCCATCAACACATTGTCATCTTCTTGACCTCTACACCCCTGCATACTTTTGTTTAGTCGAGTTCACTATGAAGCCTTTAACCAGCTAATTATGAAAGGCATTACATATGAAATCCGTTTGCTACCTCAGTGTTTAATCAGAACCAAATCTGACCTTAGCTAGATCTTGACAGTCACTGGGCGTCAAACCTGTTTTTGTGCACAGGTTCCAGGGACGGAGGCTCACCCATGATTAGCATGGTCCATGCACAAAGCCACCCTGCTGAGAACAAGAGGGTAGGCAGTTCTCTATGTGCGTGAAGACTTCGTCCTCTCATTTTCACATGGTGTGGACCAGGCTAGCAGAGCGGCCAGGGAGTTTGCCTACCTCCATGTGCCTATCTCTCAGGGCCTGTGCACGATCCCTACCTGATCTTAGAGGGTTAGCAGAACAAAAGTTTCCCTCCTCCCTACCCTCAGACCTCCAGCTCCCCTTCCCCGACGGGAACTTAAAACTCCTTTACACAAACCCTCCGAAGACAAAGTGATGCTATCAAATGGCTCTCTCAGAAGAGCTGGAGGAGGGCTGTGTTTCAAAGCAGTGCAGTTGCTTTTAAGTAGAATCTAAGACTTTTTGATCTGTAACTGCATTCAGAAGCAGGGCGTCCTTCAAAGCATCGCTTACAAAGGCCCACCTCTACAAAACGAGTGTTGTTTTTCACTAAACATCTTTTTCAAACAGCCGTTTTTTTCCATCGTCAGTTTCATGTTCTCTGACCCCAGCAGCACTCGATTCACGGTGGTGGGAGTTACTGAACTCTGTGCTCTCCATTCTGATTCTTAAGAAACAAGTGTTTACTATAAACCAGCCCTCTAGGAAAATAACCTCTGTGGCATACTCAAGAACATTTCTTTCTTTGAATAGCTTAGTATAAATGGTCCCAATATCATTTCTTTTTTTTTTTAGATCATAACTGTTTTCTGTTGCTTAATTAGAGTTTTACATGGCCAATACCCTATGGGGAAAAAAAGAATGATCAATGACCAGAGCCTCTCAGTCAGGAGTGCATAGTTTGGAGGTATAAATCATCAAAGCAAGGCATCCTGGGGAAATAGTCCAGATGACCTGGCTTCAAGGCTCCCAGATTCAGGCTGAAAGGGCTCTAATATAGTGGGATTCAGGCAATAAGAGCTCTAAGATAGCCTTGTCTTTCTTTCTTATTCCTTTTTCCAATAATTTGGAAGCTCAACATGGTCCCTGGGAGACTCCTCTGGGAACAGTCCTTTTGAGTTAGCAATGGGAACCTAGCCCCTGCAGTCTAGACAAACACCTTAAAGCTTAGGGACCAAGTTACCCTTCATGTGTCTGGTTGTGTGTGGGTGGGGGTGGGGATGGCAGAAGTGTTCCTGGGGAGGAGGAAGCTGTGAAGTTTGTGGAGTATCCCTGTAGAGAAGTCATATATAGACTGAGTCTCCTGAGAAGTCCTTTCAAAGACCTGTTCAATTTCCCTGTAACCACACATGCTTGGAGTTTATTTAGCCAAAATGAAGGGCCATGAGCGTTTCATTTTGTTTGTGAACTTAAGATCAGTAAATCTGACATCCATCTCAGCTGTAATAATCCAATGGAGTCAGGCTGAACCTTTTTGGATGTCTCCCGGAGTGAGGATGAAGGATTTTGTGTTCTTCTCTCCTCAGAAATGGAACTGATTCCTCCCTGTAGTCTTGGGTTCCTTCCACTAACCAGGCGTTGGGCTCTTTGCAG
Seq C2 exon
AGGGAGTGAGGTGCATTTGCAATCACCTTTCACTCACTACTAAGATGGACGAAGAACACCCAGAACTCAGGACGTATGCTCAGAGTCAAGGCTGGTGGACCGGAGAGGATGAATTCAATTTTGCCCAAGTCTTTTCTCCCGCTGATGACCATTTGGACTGCTGTGCAGGCAAAGACAGCTTAGAAAAGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009636:ENSRNOT00000013088:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(34.2=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(27.1=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]