GgaINT0096245 @ galGal4
Intron Retention
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128191481-128193233:+
Coord C1 exon
chr2:128191481-128191499
Coord A exon
chr2:128191500-128193136
Coord C2 exon
chr2:128193137-128193233
Length
1637 bp
Sequences
Splice sites
5' ss Seq
CATGTAATG
5' ss Score
-0.05
3' ss Seq
TGCAGAAATTGTCCTGCCAGTAA
3' ss Score
2.73
Exon sequences
Seq C1 exon
TCAGCTAAACCAAGAACAT
Seq A exon
GTAATGCAGAATAGTTTAAATGACACAGTGTTGTCCAAAAGCAATATATTGAATAGATTTGAATTGAATAGATTGAATATATATATATTTATCTGTTAAGATTAGGGCGATTCCAGTTGCCTTCATATATAACTAGTCCAGAATGGATAAAACAATTGAAACTATTACTTGGCTTCATAGGAAGTGAACTCTTTGTGAAGTGTACTTAGATATTTTGCAGTTCATTCTGCATTTCATTTTGTGCCGTGCTTCTAAAGGAGATACACCTTGTGTAGGTGAAAATTCATTTTTAGTGAAACATGATGTAATCCATTATATAAACACGTGTCAAATATTTCTTTCAGAGTATTCGATAACTTTTGGCTTTTGACAGTCTTTCCGTTTTAAGTTGGTTCTTTTAGTGCTAGCAGGGTTTGAAATTCTTTTTTGGCATATTTAGCATTGCCACAGTTTTGCTGGACAGAAGTCTCAAAATAATGAAGCTTCATAAAAATGGAGGAAGGGGAAATAGAACAGATTTTTCTTATCATCGTTCCCATTGCAGAGTATCAGCTTACCAAAAAATAAAGGTATTTCAAATCAGAGAGGCTGAGATGGATTCAGAGCTTTTGTCTATTAGACACTAGAGAATCTAAACACTCATGTACGTATCTGTAGGAAACAAGACTGTAGTAGTTCTACTGCATATGGCATGAATTGTTTTCAAAAATCTTATGCTTTCCCATCCTGTTTGGTTTAATTTCAGTTACATTTTGTGCATCAGAAAATATCTTTCCATATTCAGTCAACTTTGGAAGTTTAGAGTCATTTGAAAGTATCGTTCTAATATAGGAGGACATGAAAAACTATTTGGTAGATGAGCAAGCACATCAAGTTAGGGGAAGATGAAAACCCAGCATTTAAATTAAATGCGCCAAGTGAGAATTAAAATGTTTGTATGCAGAGGTCCCTTAATGGAACTGGTAATTTCAATAGGCTTTCTACTGAAATATGTATTTGAGTACTGGATTGGTAATCTGCTAATAATTCAGGTGAGTAAGGGATTTATGTATGTTAATATCCAATACTGTTAGTCTGTGATTTTTTCTAATTAATAGTAATGGTGAAAATTGAATTATCTGAGCTGTCTACAAAAGGCATATTGAACTTAGTTTAAATGAAGCCTTTTTGAGAATGTTTTATGAAATTTTATTCCACCTACAGGAAGGAGAGAAGAAGTCTAAAATGTGTAACATCACTGCTTTATTGGTTGTGTGTGCTGATTTTAACCTGCAAACGTTTTGATTTGGTCATGGAAAATCAGTGTTGCTATTTCAATATTCAGTATTTAAAGAGTTAATTTCAAGGTGAGCTCTGTTCCATTCTGACACTGCAGAACAGGGGTGTTCCCTTGTGCTCAGCAGTGAGAAATGAGATTTCATAGGAATAGATTCTCAGTAATCATTACAGATCACTGCTAAGTAGGAACTTTCCTGTGTTTTCTGAGGCAAATCAATCTTTGTGAAATGCAGCTTTGTGAAGAATGTTGTGCTGTATTCTCTGGAAGTGCACCCCTCGTTTGGCGTGGCAGTAGTTTCTTCTGATGATGCAAGCTCTAACTCAGCTGATTAACTTCCTTGCAGAAATTGTCCTGCCAG
Seq C2 exon
TAAGAGGCGAGGCGGCTTTGGGAAAGACTGAGATGGGGAACGCACAGAGAAAGTTTCACAGCAAAGGAGGTGGCTCCAAGCTGGAAGACAGAGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037:ENSGALT00000025838:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]