GgaINT0096250 @ galGal4
Intron Retention
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128200043-128202867:+
Coord C1 exon
chr2:128200043-128200218
Coord A exon
chr2:128200219-128202725
Coord C2 exon
chr2:128202726-128202867
Length
2507 bp
Sequences
Splice sites
5' ss Seq
ATCGTATGT
5' ss Score
5.94
3' ss Seq
GTGATCCTTTCGTTATGTAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
AATAACGAAGACTTTAATTGATCAAGATGGTTCTAGTTGGAGGGAAAAACTGCCACCGATTCCAGTTGTCCCTATTGCTGCTCAGCTAAACAGGTGGGATGGAGGAAACTTTACTTCAGAGGTTAAGCCAAAAAGTCCCACAGATATCAACAAAGAAGAACAGTTGCAGATGAATC
Seq A exon
GTATGTATAGCTAATGCAGATATATACGTACTAGAAAAGACTTTTAACCAAAAAATGGAATACAATTAAATATATTAAAGAAATGACTTTAGAAAAAATATTTCTCAGAGAACTTTGTGAAAAGTAAAATTAGATGATCTTTTATGTGATTAGGTTTGATGCACTTTATAGAGCCACGGTTAGGGTACTTTTTTTGGAGGCCAAATGATGCAGTTTAGTTTGCAGCATGTTATTTCTGAAGTTACATAAATATAGCAGAAATGCTCATCAGCAGTGTGTTGAGTCCTATCAGAAGTGTCACTGGTTTGCCTGACCTCGTACTACAGCAGCTAAAACAGTTCTTTCCACCCCCACACCCCCCAAAAAAAACCAAAGTAGACAGAAACCCACCCTCAGTAGCATAACCAGCTGCATAATCTGTAGCCATTACTTAATTGTTGATAAAAGTATTACTCAGCTGTTCAGAGCAGAACAAGTCGACTTCTATGTGGCCAGCATGTAGTGAAATGGATTACAGAAGAAAAATTCTGTTGGTTTTTTTTTATTACAGAATTGAACTTCAACTATTGTTGAAAGTGGCTATTTGGTAATTACTCTTAAGAGGCTATTTGTGGCTATTGGTAATCACTCTTAAGAAATGTTAGTTCACAGACTTTTTATGTGCATGCACTGAGTGCTTACCTCCAGTTAGGAGACTTTCCTCCCTCTGATTTATTCCTTTTGGTGGAGTTTCCATCTTTCTTGCTCCAGTAATTCAGGTGAAGGAACCTTTCCAATTCTGCTTTTATTGACATTAAATCTTTTTACAAAGGCCTTAGCTATATCATTTTTGATTCTTCCTTGACTGTTAATTGGTTCCCTTATGTGTTTTATGAATATATAAAGAAAATAAGCACTGAAGATATCTATTCTTGTTTAACAGAGAGGAGAATGCACCGCATAATTGTGTTGCTGGTCTAATATTTAGCAGCGATAGAGTTGTCTCTCTACAATCAATTACTGCATGAATGCATACCTTCAAATAATCTGTACTCGGGCACTACAGATTTAAAGACCTTAACACTATCTGGAAGGTCATCCTCAAACTTATTTGTGCTTGATGTAGAACAACAGATAGCTTACACACACACACACACATGCATTTATGAGAATTTGACATTTTTCTTGAGAATTAAGTGTGGATCTGGAAACCTTGTAACTTATGAATAATCTGAATAATAGCATATATAGAACAGTGGTAATGCTGCAGGAACTTAGTTTTTTGTTTAAGGGACATGAAGGATGTCAATGTATATTTTAAGCTCAATTAAATCCATGAAAGTTTTACTGTACTTTTTAAAACGTTCAATGACTGAAGCATTTACATTCATTGTGCATATTGTTACTGATCTATCGCTTAAGGATTGGACAGTTTAGCACTTAATTTTGAAATGAAGTAGCAAACTGGTATTTTACATGAGTGTGTTGCTATTAAAACAATTTTCAAGCTAAGCTTTTATATTTATGCTGCAGTGATTGTACTCTGGGCTTTTTTATTAAGGGTGGCAATTTGCAGGGCTTTTTTATTTCACTGTATAACCAATGTACGTTGTCTAAGCCATTTAACTTAACTAGGAGGGATCAAATTTACATCTATACAACCTTGTATAATGTTGCGAAGACAGATAATTTGAAGATCATCACAAAGATAGCAGTTCCCTAGGTCATGTCTAACCTGTTCTGAAACTTCATTGTTAGCCATCACTGTCTCCACAGATTGTGTTCTGTGAGATTTTGATATAAAGCACTTCTCAGTCTACTTCAGGAGGCATGAAAGTGCAATCAGGATTGGTTTTCCATTGTAAACATTAAAGTTGTGGTCTAATCCAGAAGCAGGTGTAACAAATGATGTGGAAAGAAAGACAATTATGAAAGAACAAAACATTTGTATGTATATGTGTAGTTTGGTGTTTTCCAGTTACTTGAAACGTCTTTATCATAAAAGTCATTAACAGAATATTGTTGATGTCTCACTCACTCCAACTGATGTGATTGTTTGTCATTGTCAGTTTAACATAGAAATTGTGATGGATTGGTTGCTTGCAGAAAGAATATTAGGTAACATTGTGGCCTTTTCGGTGTGATGGTGAAGATTTAGAAGGCTTTTAATGCTACTGATTACATTTCCACCGCTGTAAATAAAGCCAGTATTTCAATGGTTCGTCCCTCTGTACCACAAAGAGCAGGTTGACAGGAGAAGATAAAAGTAGAGTTGCCTGTTGCATTCACATTATTTTCAGCAGAAATAGTTACCTTGGTGTATTGGAAAGTATGTGTTATGTCACATGCATGTATGTACGTTCATACCTTTCTTATAGCATCAGGAAGATGTGGGACAGAAATCAGAATGTGCGAACTGATAAAAATACTCCTGATGCCAGGCAGTTATTCTTAGTCTGGGCAGATTATTCAGTTACCTGTAATGAACCAACCTTCTTACGTAACACTGTGATCCTTTCGTTATGTAG
Seq C2 exon
GTGAGAAAGCTGAGGAAAAGTTCAGGACATTAAAAAATGAAGGGAATGATTTTGTGAAGAAGGGTAAATATGATGAAGCTGTAAATAAATACAGTGAATGCTTGAAGTTAAATACCAAGGACTGCACAATATACACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037:ENSGALT00000025838:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(60.0=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]