HsaINT0157140 @ hg19
Intron Retention
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101237401-101243516:+
Coord C1 exon
chr8:101237401-101237567
Coord A exon
chr8:101237568-101243383
Coord C2 exon
chr8:101243384-101243516
Length
5816 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TTTGTTTTTTTGTCCCATAGATG
3' ss Score
11.01
Exon sequences
Seq C1 exon
GCTATCAAGAATTTTAATGGAGCTGGATGGACCAAATTGGCGGGAGAAGCTGTCACCTATTCCTGCTGTGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAAGAGATGATCTCAAAACAAGCAGGAGACTCCAGCAGCCATCGCCAGCAGGGCATCACAG
Seq A exon
GTGGGGGATGCCTGCACTCATTTCTTCTCAAGGTTACCTTGAGTTGTGTGTGTACTTTCACAGTAAAGCAGAGAGATAAGAGCATTAATTCTAGAATCAGACCTAGGTTTAAGTGAAGTCCCTGTTCTCCCTATTTTATTATTATTTTGAGACAGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCTGCTTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTACCACCACACCTGGCTAATTTTAGTGGGTTTTTTTTTGTTTGTCTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAATGATCTGCCTGCTTTGGCCTCCCAAAGTGCTGGAATTATGTTCTCCCTCTTTAAAACTACATGGTCTTAAGAAGTTGCTACATACCTCCTGTGTCCTACTAGTATACATGTAAAAGCGTTTTTTGTTTTGTTTTGTTTTGAGACAGGGGCTTGCTCTGTCACCCAGGGTGGAGTCCAGTGGCGCAATCACGGTTCACTGCAGTCTCGACCTCCTAAGCTCAAGCAATACTCCTGCCTCAGCCTACTGAGTAGCTGGAACCACAGGTGCACACCACCATGCCAGCTAGTTTTTTTTTTTTTTTTTTGGTGGAGTCTCACTTTGATGTCCAGGCTAGAGTGCAGTGGTGTGACCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGTGCCTGCCACCACGCACGGCTAATTTTTGTATTTTTAGTAGAGACGGAGTCTCCCTATGTTGCCCATGCTGGTCTCAAATTCCAGGGCTAAAGTGATTCTCCTGGCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCATGCGTGGTTTAAGGCAGGGGAATGTATTAATAAATGTCTCACAAGGAGGTTGTCAGAAATAAATGGAGATGTGTATATAAAATAGTATATTCTGACTTTGTAAACCTGTAGTAACCTCTTAAACATTGTTAACTAAGAAGGCCAGGTGCAGTGGGTCACTCCTGTAATCCCAGCACTTTGGGAGGCAAGTGGATCACTTGAGCCCAGGAGTTCAAGACCAGCCGGGGCAATATGGCGAAACCCTATCTCTACAAAAAAATAGAAGAATTAGCCAAGCGTGGTGGTGCATGCCTATAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATCCCGAGCCCAGGAAGGTTGAGGCTGCAGTGAGCTGTGATGGTGTCACTGCACTCCAGCCTGGGTGACAGAATAAGATGCTGTCTCAAAAAAAAAAAATTTAAATAACATGTAGCTCTACAGTAGACCCTGTATGTGATGAGGCTAAAGGAATAAGACTGATATGTTTAAAATAATAAAGTAAAGCCCCACAACATAAATATAATCATGTGCTCATAATGGTATTTCAATCAACAATGGAGCACATATATGACAGTGATCCCATAAGATTATATACTGTAACTTTACTGTGTTTTTACTGTAAAGGTACTATACTCTTACTGTACCTTTTCTGTGTTTAGATACACAAATACCATTGTGTTACAGTTGCCCACAGTATTCAGTACAGTAACATGCTGTTACAGGTTTGTAGCCTAGGAGCATTAGCTTACACCATACAGCCTGGATATATGGTAGGCTATACCATCTAGGTTTGTGTAACCACACTCTATGATGTTTGCACAATAGCGAAATTGCCCAACGACAAATTTCGCAGAATGTATCCATTGTTGAGTGATGCATGGCTGTGTAATGCAGGTGCTTCCTTCTGTCTTTATTGTAGTTGTTAAAAAATTTGTATTCCCTTAGTGCCTACATTATTACTTTGAGTGTAGTAAGTAAGCATTTAATAAATGTGACTTCACCCTTGCTTTCTGCTTTAAAGCCAGCTGAGGCCCCATTTCTCCCACAAAGCTTAGAAACTCCATATGTGTCCCCAGGCTGTGCTTCATCTTGCAGATGCCCTGAGGTTCCTGACCCATGATGTCCAGATGGCTAGTGTTGGACCCTCATTTTCTTTATTGCCAAGAAAGAGCAGACAGGGAATATCTGCCAAGTAGATGATCTAGCAGTCCTAGGGAAATTATGGAGATCTGTAGTTTTCTAGAGTCCATTATTAATAGGGCCTGACACAAAGCATTTGTTCAGTAAATAAGAGCTACTTCTTATTAACAAAATGCATATATAGCTGTGAGTTAGCAAACCATAGCACAAGTATAATCAGCTGTGTTTGAATTTTTCTGTCCATATTTGTTTACTGATTGATAGTGAGAATGGATACCAAAGGTTTAAAGACACTGGAGGATAAAAGCTTGAGGAAAATTTTTCAGCAAAATCTTCCCTAATATTCTATTTCAGGGTTTATATACCAGGATTGGGAAAGTACCATTTGACCCTATTGTGTCAGATTTTTTTTTTTTTTTTTTTTTTTGAGACAGGATCTTGCTCTGTTGCGCAGGCTGGGGTGCAGTGGTGCAATTTTGGCTCACTGCTGCCTCGACCTCCTGGGTTCAGGCAGTCTTCCCACCTCAGTCCTGAGTAGCTGGGACTACAGGTGTGTGCCACCGTGTCTGGCTAATTTTGTATTTTTTATAGAGACAGGATCTCATTATGTTGCCCAGGCTGGTCTCGAATTCCTGGGCTCAAGTAATCCTTCTGCCTCAACCTCTGAAAGTTCTGGGCTAACAGGTGTGAGTAGCCTAGGCTATGTGAGATCTTTTGAAACATGAAACATGGGCAGAAATATTCTGTGATTTGAAATAGAAGATGAAAAGTAAACTAGCATTTTATACAATTTGTGCAGAGGGACAAATAAGATTATTGTTTACATTCTGAGTTTATATTATAAATTTAGGGGGCTGGGCATGGTGGCTCTTGGCAGTAATCCCAGTAGTTTGGGAGGCCATGGCAGGAGGATCACTTGAGGCCAAGAGTCCAAGACCAGCCTGTGAAACAAAGCAAGACCCCCATCTCTACCAAAAAAAAAAAAAAAAAATTGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTTGGAGGCTGAGGTGGGCAGATCGCCAGAGCTCAGGAGTTTGAGACCAGACTAGGCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGAGCATGGTAGCATGCCCCTGTAGTCCCAGCTGCTTGGGAGGCTGAGGTGAAAGGATGGCTTGAGTCCAGAAGGCAGAGGTTGTGGTGAGCCGAGATTGCACCACTGCACTCTAGCCTGGGCGACAGAGCCAGACCCCATCTCAAAAAAGAATAATAATAATAAAATAATAAATTTATCTATCAGAAGATTTTAAGATTACAAAATTTAAAGGTATATTTTAAATTTTAATTTATGGATTTTTATTATATATCAAATTATTCCATAGGATAAACTTATTACCTAGGTTTAAAACTTTAAATTTTAATATTTTGTGTATGTTTGAAAACTTGGTTGTAAGTAACAGAAAATCTGTTGACTTAAAGTGTAAGGGATGGTCTTGGCTTGTGTCACTGAAAGGGCCCAGACAGGCTGTAAATCAGGCTCAACTCATTAAGACTTAGGCTGTAGCAGGAAACAATAGAACTGTAGCAGTTTTAGGCTTTACATCTGCACATATCAGTGTCCAAAGAGAGAGAGAAACCATTGATTTTGATGGCATTAAGAATGAGGAAGTAGGCCGGGCGTGGTGGCTCACGCCTGTAATCACAGCACTTTGGGAGGCCGAGGCAGCACTTTGGGATCCTCGAGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACAGTGAAACCCCATCTCTACTAAAATACAAAAATTAGCCGGGCGTGGTGGTGGGTGCCTATAGTCCCAGCTACATGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGCAGGTGGAGCTTGCAGTGAGCTGAGATTGCGCCACCCACCGCACTCCAGCCCGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAAACAAAACAAAACAAAAAAAAACAAAAGAATGAGGAAGTACATTTCCCCAAGGCCCAGGCTTTTTAATCTGTTATTCTGTTCATCTGAATTGGGCCATGTGCCCATCCCTGAGCCAGTCTCTTTTATGAGGAAACACCCCACGCACTGAATGGCTTAGACCTGGGGTTTTGATCAGTGAGGTCAGCCTCCCCTGAACACGTGGTCTGAATAGGAGAGGGGTGATAGCTGAATGAATATTGAGGTCCTGGAAACAGATTCTGAGCAGGGTATCAGCCATGTTCACTGCAAGATAATAGGGATAGTGTGTAATTCTGGTAATGAGCAGTTCAGACTCTGATTGTAGATAACAGAAAGCCCAACTTATAATGCCTCAAGTAAGCAAAAAGCTGTTTATGGGCACTTACTATAGACATATCCACAGGTGGAGTGGCTGCAGGGATGGCTGGATTCAGGACTCAGAGACTCCAGCTCTCCATCTTGGCCTCTTCCTTGCTCTGATGGCCCCATTTTCACATCATCCCTTTTTATCACAAGATGGAAAAATAGCTCCTCCTTTGAGCCTTAAATCCCACAGGAAAGAAAAAGATTTATTTTACAAGAACCTTGCAAAACATTTTATCAGCTCTTATAGACTCATCCCTGAACAATTGGATTACTATGGCCATAGGACCATGATGTGCTGATTAATAAAATGATTATCCCAAAGGTTAGGGCTGGAGTGAGGTTTGCTTCACTTAAACCAAAGGAGCACAGAATGAAAGAGATATGATTTCCCAAGGAAATTTGGGGTGCCGGATAGATGTCCACTTCAGGCTTTAAGAGGAGTGTTCACTATTCACAAAATAATTGCCAAGCAAAACACTGTGGATATTTGTATCCCATTTCATTGACTGGTTCTGTCGTATCCAAGCTTAACCAGAGGTCTGAAGTGCTCGTGTACCACTGTAAAAGCGCTGTGTGAGGCAGCATAGATGGAGATGACAGAAAACACTGTGAGGGTTGCTAGTTCACATGTGCAGCCTTATTGGAGACTCTGCCTCTTGTCATATAGTCACCTGAGCCCTGTTAGCATTGTTTGCTTAATTCTCTCCATCTCTAAGGTGGTTCTGGCCTCTGTTACTGTCTTTAGAATCCCAGTAGAGAAAAGATGGCATGTCAAGATGGATAACATGACAGAATTATTACTTGTATCTTATTTTATTTTTTTGAGATGGGGTTTCGCTCTTGTTGCCCAGGCTAGAGTGCAACGGCATGATCTTGGCTCACCACAACCTCTGCCTCCCAGGTTCAAGCACTTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGCATGTGCCACTACGCCCAGCTAATTTTATATTTTTAGTTAAGATGGAGTTTCCATGTTGGTCAAGGTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACTGCACCCGGCACTTGTATCTTATTTTCTAATTAGAAAATAATAGTATCATAATTATATAATTATTTTTACTTATAGCCTATTTGTCATTTTAATTTGTCTACAAAGTTTTGTTCTAGTTAGATTTTCACCCTGCATGCTGTGTGGTCAAGTTAATTTGCAATAGAAGATTTACTTATAGTTGTACTTAAGATTTTATAGAGGTGCTTGTACAGATACTTCCTCTTCTTTGTTTTTTTGTCCCATAG
Seq C2 exon
ATGAAAAAACATTTAAAGCCCTTAAGGAAGAAGGAAATCAATGTGTAAATGACAAAAACTATAAAGACGCCCTCAGTAAATACAGCGAATGCTTAAAGATTAACAATAAGGAATGTGCCATATATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450-SPAG1:NM_172218:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(61.8=93.3)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)