BtaINT0139369 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66330873-66334699:-
Coord C1 exon
chr14:66334533-66334699
Coord A exon
chr14:66331006-66334532
Coord C2 exon
chr14:66330873-66331005
Length
3527 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTTTTGTGTGTGTTCCATAGATG
3' ss Score
11.24
Exon sequences
Seq C1 exon
GATAACAAAGATTTTGATCGCTCTGGATGGCCCAAACTGGCGGGAGAAGCTGCCACCCATACCTGCTGTGCCCACCTCCACACAAGTCCGGGCTTGGCGGCCTGCAGCAGAGACGCCCCCAGACCAAGTGGGAGATTCCTGTTGCCATCCCCAGCCGGGCATGCCAG
Seq A exon
GTAGGGGAAGCCTGCACTCATTTCTTCTGAGGGTTATTGTCAGCTGTGCATGTTATTTTCTCAGTAGAGCGGGAGGATAAGTGCGTGATATCAGGCATCAGACCTGGGTTTAAGTTCAAGACCCTGCTCTCCCTCTGTCTAACTGCAGAGTCTTAAGGAGTTGCTGCCCACCTCCAGTGTCTTCATGTATGTGAAAGGGGGAGATGTGAATAACTGTCTCACGGAGTTATGCTCAGGAATAAGTGGAGATATGCATATGGTATTCTCAGTACAACGTGCTGCCTGTGTAAGCGTACAGTAACCTCTTCATAGAGTTGGACTGTAAAGAAAGCTGAGCACTGAAGAACTGATGTTTTTGAACTGTGGTGTTAGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAAATCAGTCCTGAATGTTCATTGGAAGGACTGATGTTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGCAAAGAAGTGACCCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAAGGTGGGAGGAGAAGGGGACAATGGAGGATGAGATGGTTGGATGGCATCACCAACTCAATGGACATGAGTTTGAGTCAGCTCCGGAAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAGTCCATGGGGTCACAAAGAGTTGGACACGACTGAGTGACTGAACTGAACTGACTGAACCTCTTCATAAAGGTTGTTATTGTTTAATCGCTCAGTAGTGTCTGACTCTTTGCAACCCCATGGACTATAGCTCCGGCTCCTCTGTCCATGGGATTTCCCAGGTAAGAATACTGGAGTGGCTTGCCACTTCTTCCTCCAGGGGATCTTCCTGATCTGAGCATTGAACCTGTATCTCCCTCATTGCAGATGAATTCTTTACCACTGAGCCACCAGGGAAGCTCCTAATAAAGTTTGAGTCAGCATTATTATTAATAATAAGAAAAAGAATTAAGTAGCCATGTGGTTCTCATCATACCATGAATGTGGTGGCAAGGCTAGTGTAATGAAATTGATGTTTTTGAAAGAATAAAGCCTTATAACATGTATCTTAGCGGGACCTCCTTCTCCCTTACATCATAGTCGTTCAGGTCCACAAGTGCATCCCCACAGTGCCCACCTCAGCACTTTGTGTAGAGTGTGTAGTCAGTGTGACTTCACACTGGCCTTCTGCCTGAAAGCCAGCTGAGGCTCCGTTTCTACTGCCTGCTTAAGGACCCATGTGTGTCTTTGTTGGGCTTCATCTTGCAAAGCCCCTGAGGTTCCTGAACTGGCATGTCCCGAAGGCTGGTGTTAGACCCTCACCCTTTTCTTTGCCTAGAAAGAAGAGGCAGGGAACTTCTGCCAAGGCTTTTAAATGGGCAGCAGTCCTGGGGAAGCTGTAGAGATCTCTAGTTTCTAGAGGCTGTAATCAGTGGGGACTGGCACAAAGTATTTGGTCAGTAAAGGGTAGCTCTTCATTATTAATAACATGCAAAAACTAACCATGCTGTAGATATGTGCTAGCAAGTCATGAGCACAAGAATAATCAGTTCTTTCTGTTCATATTTATTAGTGAGACTGGATTCCACATTCCTAAAAACAGTGTGGGAAGAAAAGCTTGAGGAAAAATTTTCAGCAAATTAGAGGGAAAAAATCCTCTGTAATAATCTGTTTTAGAGCTTATATAGACGCCAAGATTTATGGCGAGTGTCATTTGGCTGCATAGTGTGAGATTTTTTGAAACATGAAACATTAGGCAGAAATATTCTGTGATTTGAAATAAGGGATGAAAAATTAATATTCTTGCCATTTGTGCAGAGGGACAAATAAGGTTATCATTTATATTCCAAGTTTATACTATAAATTCAGTGCATCTATCAGGATTTTTAGAGCACAGAATTTAAAGATATATTTTAAAATTTAAGTTATGGATTTTTATTTTATATCTACTCTATAAAGTTAATACATAGATTTAAAAGTTTAAATTTTAATATTTTATGTATGGTAGACAACCTTGGTTGCAAGTCACAGAAAATCTGTTGACTTATAACTGTAAGGAGATAGTTTTGGCTCAAAGTAACTGAAAGGGCCTGGGCAGGCTCCAAAATCAGGCGTGATTTGTCAGCGCTCAGGGTATGGCCAGAAATACAGAACTGTAACAGTTTTAGACTTAATGACTGCACAGATCAGTGTCCAAAGAGAGAGAGAGACACCACTGCTTTTGGTGGTATTAATTTAAGGATTAGGAAATACATTGCCCTAAAGATCTAGCTTTTTTTAGCCTGTTGTTCTGTAGGCTAAACTGTCTTGGTATTTATTCTAATGAGTCATATGCTCTTTCCTGAGCCACTCCCTCAGTGATGAAAAAAATGCCCTGATTGACTTAGACCCAAGTTCTGATTGGTGGGGTCAGTTTCCCCTGGACACGTGGGCTGAGTAGGAGAGGAGTGAGAGCTGCGTGAATATCGAGGTACCCTTAGGAAGAAGGGAATGGATCCTGAGTGGAGGGTCATGCTCACGGCAAGATAATAGGCAACAGTAATAGTTAGGACTCTCTGATTGCCAGTAACAGAAAACCCAACAATGAATGTCTTAAGCAGAAAAGGTTGTTCATTGGCTCCCCCCTTGTGGAAAAGTCCACAGGTAGGATAGCTGCCCGGGCAGCTAGATTCAGGGCTCAGAGGTTATTCTTGAGCTCTCTGTCTTGGCATCTCTTTTGCTCTGTTGACCCCATTCTCAGACAGATTCTCCCCTTGTATTGCACAATGACAAAATAGCCTTTTATCCTCATGTTCCACAGGGAAAAGCAAGAATTACCTTAGCAGAAGCTGCCACAAAAATCTTATTGTCACTTATTGGCTCTCATAGGTCCTTCCCTGACCAATTAGCTGACTGTGGCCAAGGGAGTATAATGTGCTGGTTAGTAAAGCACTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTCTGCGACCCCATAGACGGCAGCCCATCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCATAGTAAAGCACAGATTACCCCAAAAGGTAGGGCTGGGGTGAGGTTTGCTTTGCTGAAACCACAGGAGCAGAGAGGGGAGGAGGTGTGGTTTTTCCAAGGAAACTTGGACTGTTGGAAGAAGTCTAATTAAGGCTTTAATGGGTTTGTTCATTCATTTTTCACGACATAGTTACCGTCTCCAGCAGAGAGAAGGCATACCAATATGGATAAAATGATACAATCGCTTGTATTTTATTTTCTAATTTGAAAAAACTGTGTCGTCATTGTGTAATCAAATTTTTACTTGTAGCCAATTTATCTTTTTAATTCATATACAACATTTTGTTCCATTTAGACTTTAGCTCTGTATGGTTTGTGGTCACTTAGTTTACAGTATACTTAAAGTTTTGTAGAGGTGCTTGTATGAATAATTCCACTTTTTGTGTGTGTTCCATAG
Seq C2 exon
ATGAAAACGTATTTAAAACCCTTAAAGAAGAAGGAAATCAATGTGTAAAAGACAAAAACTATAAAGATGCCCTTAGTAAATACAGTGAATGCTTGAAGATTAACAACAAGGAATGTGCCATTTATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544:ENSBTAT00000046176:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development