RnoINT0141949 @ rn6
Intron Retention
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75043642-75046302:+
Coord C1 exon
chr7:75043642-75043802
Coord A exon
chr7:75043803-75046169
Coord C2 exon
chr7:75046170-75046302
Length
2367 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTATTTTATTGATCCCATAGATG
3' ss Score
8.69
Exon sequences
Seq C1 exon
AATAACAAGAATCTTAACAGAGCTAGATGGACCAAAATGGCGGGAGAGACTGCCCCCCATCCCGGCTGTGCCTGCATCTGAGCCTCTGAGAGTTTGGCACCCTGCTGCTGAGACCCCAGACCAAGATCCGTGTCCCAACAGCTGCACGCCCACCATCACAG
Seq A exon
GTAGGAGGACTACCCATGTTTCCTCCAAAGGCATCTTGAGCTCCACGAGGGAGCAGAGGCTGAGCTGCGGTGTCAGACTGGGGTCTGGCTTTCCTCCCTCCTAACGCATCCCTGTGTACAGGAAAGGGGGCAGATAGGGAGTAGCCATGCCAGTGGCGGGGTCTCATTGTGGAACTGGCATTATTGAGAGGAAGAAGAATAATTATGCTCTTCAGGAAACCATGTGGCAGCGTGAAAAGAGCAAGGGTGATGTGTTAAAAATAAACCAGAAAGCTGTTCAGGGCTGCTGAGACGGCTCAGTGTATAAAGGTGAAATCTGTACAAACCTGAAGACCTGTGTCTGTCTCCAGGACCCATGATGCAAGGAGAGAGCACAGTCTGACATGTTTGCTGTGGCACATGCCGTCCACAGTCACACACATCACATGTACAGATAATACATTCTCAAGTTCTAATATGCAGATATATTGTAGGAAAACTTGGATGCAGAATAATATCATACAGGCTTTAAGGTTCAACACTGTGCGGCATATATGTATTGAATCTTTGCGTTTTGAACATTTATTTTATGTGTATGGGTACTTTGCCTGCATGTATGTATGTGTACCACATATGTGCCTGGTATCAGAAGAGGGCATCAGATCCCATGAAACTGGAGCTACAGGTGGTTGTGAGCCACCATGTGGATGCTGGGAATTGAACCCCAGGTCCTCTATAAGAGCAGCAAGTGCTCTTAACCACTGAGTCATCGTCTCTCCAGTCCCTAGGTTTTTAAAATTGTATGTATGTGGGAGATCTGAAGTGTATGACGTGTGTGCTGCATATGAAGCTTGGGTCCTCTCCGAGAGCATAGTGCTCATAACCACCGAGCCATGCCTCCAGTGTCCAGCTTTGGGAGTTTTGAGTGAGGGTTTTCACATGGTCCAGATTGGCCTCTAACATAATGTGGAACCACAACTAACCCTGAATGCTGGTCCTCCCACCTCTCCCTCCCAGGTGCTGGGACCTCATGCATGCAGCACCATGCCCACTCTCTGATGGTAATGGTGTTTGTATCTGTTTCATAGACTTATTCTGCCGTAATTCCAGCTTCAAGAGATGTCTAAAGTACTATAGCCAAGTGCTTAAAGAGACAGTGTTCTTTTGAATTACTGGAAACTGTGGGCTTGTGGGTTCACTGAAGCAGCCATGTGTGAGAGTGTGCCTCACATTGTCTAGTTGCCTGGTAACTAGTGACTGGTAACTGAGTGACTGCCTCCATCTACACAGTTCTTGCTCCTGTTAGTGCCTCCAGATTGCCAGCAGGGAAGAGAAGACATGGCAATGTATGTAACACAGTGGCACTGCACTCTGACATGTGTAACACAGTAAGTGGCACTGCATTCTCTGACATGTGTAACACAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTGTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTGGCACTGCACTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACGTGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTGGCACTGCACTCTGTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACGTGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTGTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTGGCACTGCACTCTGACATGTGTAACACAGTAAGTGGCACTGCACTCTCTGACATGTGTAACACAGTGACACTGCACTCTATTCTTGTAATTTGAAAGTAGCAGCATCATAACTATTCATACATTGGGCAGACTCTCTTTACCTTTATGTTGTGTTCCGTTTAGTCTATAGCCTCATGTGCGAGGGCGTGACTGTAATGGAGAGTTTACTGATGATTGTTCTTAAGAATTTATACATGTAGCTTTGCGCAGTGGCAGTATCGTAGCCAATGAGGCTCATCTGAGGTGCGATTATTGCTAATTGAAAGATTGTATAGATGTATTTACAGGAATGTTTTCTCTATATGTTTATTTTATTGATCCCATAG
Seq C2 exon
ATGAAAAAATGTTTCAAGCCCTTAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGACGCCATTAGTAAATACAACGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078:ENSRNOT00000013801:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(61.8=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]