DreINT0166350 @ danRer10
Intron Retention
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52227733-52228114:-
Coord C1 exon
chr6:52227957-52228114
Coord A exon
chr6:52227881-52227956
Coord C2 exon
chr6:52227733-52227880
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
GTCAGCCATTTCATTTCAAGCAC
3' ss Score
4.73
Exon sequences
Seq C1 exon
AATGACCAAGGCTTTGACAGAAATGGATGGACCATCATGGCGAGAGAAACTGCCCCCGATTCCTACCGTTCCAATGTCCGTAAAGGAAAAGTTAGGACAAGCCGCCAGTCCAGCCTCCAGCTCACAACAGAACAACGTGATCGACGACAAGAAAAAAG
Seq A exon
GTATTTACTTTTGCTGTACCAAGCAAATGCCTCACACTTGCCTTCAGAACCTGATTGTCAGCCATTTCATTTCAAG
Seq C2 exon
CACCAGGACCAGACGCTGTTAAAAAGGGCAGAACTTTAAAGGAAGAAGGCAACGCACTTGTGAAGAAGGGGGAACACAAGAAAGCCATGGAGAAGTACACACAGTCACTTGCTCAAGACCCCACAGAAGTCACAACCTACACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557:ENSDART00000001803:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(61.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTGCCCCCGATTCCTA
R:
TCACAAGTGCGTTGCCTTCTT
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]