MmuINT0163784 @ mm9
Intron Retention
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:163884402-163886744:-
Coord C1 exon
chr2:163886575-163886744
Coord A exon
chr2:163884550-163886574
Coord C2 exon
chr2:163884402-163884549
Length
2025 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCTTCTGAATTTGTGTCTAGTGC
3' ss Score
6
Exon sequences
Seq C1 exon
AATAACCAGAGCTCTCATGGACTCCCTGGGACCTGAGTGGCGCCTGAAGCTGCCCCCTATCCCTGTGGTGCCTGTTTCAGCCCAGAAGAGATGGAATTCCTTGCCTTCAGATAACCACAAAGAGACAGCTAAAACCAAATCCAAAGAAGCCACAGCTACGAAGAGCAGAG
Seq A exon
GTGAGCTGGGCTGGGGCTAAGTTTAGAGCAGCCTTCCAGAAACTGGCCTCATGTCCTCATTGTCTCCTATGACATCATCAGGTGACATCATCAGGGTAAGGCTTCAGTTGTACACGGGATATGAATGTCCCAGCCTGGCACATAGGCACAAGTCCTAGCTCTTGTTGCTTACAGTGTTTGGGTTGCAAAACCAGAAACTTCCAACATGGCAGAATAATAGAGGAAATGTATTGGCTCACAGTTACATGTGTAGTGCCAAAACCCCCACCCCACTTTACCCACCCCTCAACTCAATAGTTAAATTAAGGTATTCCCCTCCCCCGTGTCTTAGCTTGTGTTTCCCCAGTGTCATTGGTCACAGGCTCCTATGACCATGAACTGACATTTTGTAACTGTCAGCCTCCTCCCCCTGGGACCGTCCAGCCATCCCCATAACCAGAAAGTGATCTATAGCTAGAGAACGAACATATGCCCTGGGTAACAGAAGGGTGAGGGAAAGCAGCAGCAGAGCCAGGCAAGCATAGCAGGAGAGCCTGTGCCGGGAAGCTCCCACTGATGCTCCAGGAGAGCTGACCTGGGCTAGCGAGCATCAGTTGAAACGCACAGGGAAGTGCACAGGCTTTTTATCAATGAGTGAAGGAGAGGGCACTCATTACAGGTTTTGGCAGGAAACTGCCTATGTACCCATGTGTGAGCCTGGTCATTGTTTTCCATTCTTCCTTAGAAGGAGACTGCAGCATGCTAATAAACTAGATGGCTCAGGGTACCTGACTGTTCTTTGTTCTTTGAAGTCACTGAGCCATGTGTTAACAAGCTCTGTGCTAACCACTGGAGCACAGAAGAGGGAGTTCCTGGTCTAGTGAGCAACTGGGTCATGGAGACAGTGATTTAAAGTATATGGAGGAAAAGCAAGTGCCATGGAATGGTTAGTGTTTGGGAAGTTTAAACACGGGCAGGTGCTAAAGGTAATGGCTTGACTGGACCTTAAAGGATGAGGTCATTAGGGAGGAAACTTGGAGGCAGAGACAATAGGAAGGAGCGACATAGGTATCGAGACTACCGAGGACTACCGAGAGGGGCATTGCAGAGCCCAGGGAGCGCTGAGTGCATGCATCCACCTACTGGGCTGCTTCCAAGGACTCATGTTCGTGTGTGCAGGAGTGCTCGCTGCACAGTGTTGGATAATAGCAAACCAAAACTAGAAATTACCCAGGTCACCACAAACAGGACAGGGGACAAATCTTTCCTGGAATTTTGGAAGTGAAAATGTATCAACTACAGCTCCACATATTCACAGACAAATCTCAGTAGACCGTTGAGGGGAAAGCAGCCAAGCCATGAAAGGCTCTATTGGGGATTTGTTTCTTTAAATGAGGCTCCACGGCTAGTTGCTTATAGATGCTATTGTAGCCATAGATGAGATTACACTAGATTAGACTAGATAGAGCGAGCGAGCGAGTGAGTGAGTGAAGGACTGTAAAACACTATGGTGGGGCACCTTGGGTTCCCCTTGTTCTCCGCTCTCTCCCCTAAGGGCTGGAGTGACACTACATATGGCAGGTAAAAGTAGATACTCGCAGGCTAAACACAAAACAGAGCAAGCCCTCTTCAGCCTTTCCTGAAGCCCAGAAGCCAAGCCTTTCTGTCCTCAGCCTCTCCTCAGGAACTTGTAGGCTGCTCTCCATTTGTTTATTTTCTCAGCTCTGACCTTAACTTAGCCCTTTGCACAGAGGTAGGAAACGGAGGTACTGAAGTTAAGTGGGTCATTCCAGCTACCCAGTGTCAGTACCGTGAGGAAACCTAGCTTGCTTTTTATCATGTGTGTGTTTATAAGTCTCCATCCTCTGCTAATGCAAACCTTTAATTGACTAGAAGGCATTAATTAGGGGACTCGGTAGTCAGGAAGAATGCTCCGCAGCCGTCCAGGCAGTCCCTGACTTGGAAGGGGTGATGCTGAGGAGATGTCATTGATCTCCTGTGAGCACCTGATCCATGGTTTTTTTCCTCTTCTGAATTTGTGTCTAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAAAGCTCTGAAGGAAGAAGGCAATGACCTTGTAAAGAAGGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAGAGCCTCTTGTGTAGTAGCCTGGAGTCTGCCACATACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322-Tomm34:NM_025996:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.380
Domain overlap (PFAM):
C1:
PF0499812=RNA_pol_Rpb1_5=PU(20.9=56.9)
A:
NA
C2:
PF134141=TPR_11=PU(61.8=84.0),PF0499812=RNA_pol_Rpb1_5=FE(31.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: