BtaINT0151419 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74076067-74079226:-
Coord C1 exon
chr13:74079057-74079226
Coord A exon
chr13:74076215-74079056
Coord C2 exon
chr13:74076067-74076214
Length
2842 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TCTTCTGAATTTGTATCTAGTGC
3' ss Score
5.71
Exon sequences
Seq C1 exon
AATGACCAGAACTCTCATGGACTCCTTTGGGCCCGAGTGGCGCCTGAAGCTGCCCTCTATCCCCTTGGTGCCTGTTTCATCTCAGAAGAGGTGGGAGTGTCTGCCTTTGGAAAACCACAAAGAGCCATCTAAAAGCAAATCCAAAGGAACCACAAGCACGAAGAGCAGAG
Seq A exon
GTAAGCTGTGACTTCCCACCTGGAGAGAGCCGCGGTCTCCGCAGAGCCACGTTCTTTAGAGTTATCCTATAAAAACTGGCCTCGCTTAAGATGAGTTACTTTTAAAGTCCTATAAACAAAGTGAAAAAACAAGAAGCGTAACCCCTTAGGGACGGTCTCCTCAGCGCTGCAGTGGGCAGTGGGAAAGCCAACCCCACAGGTGTAAGGCTAAGGTGACGTAAGGCACAGTGAACTCCCAGCCTGGCACCCAGTTATCTCGTGTTTGTTCCCTTCTCATTCCTTTGGCAGCATTTGAGATGTATCATTTAGGATGTTTTTGGTTGCAGAAACAAGAAACTCCATGTGGTAAAAATAATAAAAAGAACATATTGGCTCATACAACAAAAAGGGCCTTCAGGCAAGGCTTGCTCCAGCAGCTCACTGCAGCATCAGACTCCCATTTCTCTGTCCTTCTCTCCACTCTTTTCTCTACGATGTGTCAGCTTTGTCTTCAGGCAGTCTTCCCTCCTGAGTCGTACAGAAGCGGTAGCAGTAGAACCATAGCAGTTCTATGCCTCACATCTGCATGCCGTGCCTCATGACCAAGAGGGAGAGAAAGAGTTGTTTTTCTGAGAGCTCCCTGAGAAAGAGGGTTTCTTCCACTAAAATCCCTGGCTCATCTTTTCTTAATATAATCTAGCCTATAAACACAGGCCATTCCCTTAACTAGTCCCTGTGACCAGGGCCTGAGATTTTGTGACAAGCTCAGCCTGACATCCATCTGCTCCGTCTCCGTAGCCAGTGGAATTCACACACTTACTAGTCTCTGGAAGGGAATAAACAAGGGAAGGGAGGTCAAGGCCAGGTGGCCCCAAACAGGAGACCTCAGCTTTATGGAACAGAGAGGACCTTCCCTGGGCAGGGGCGATAGGAAACTTATAAGGCTCCAGGGGAGTTCTCCCAGCCCAGCAGGCTTGGTATTGAGGATGGGAGGCTCAGGGGGCAGGGCTGCAGCCTGGCCTTGGGTATACAGGAGGACAGGGATTCTCCCCTTCCCAACAGGAAACCTGTCTGGCCATGGGCAGCATTCACTCCCTAGAATGAGAACATGAGCCGCTAATGAACTTGATGGCTTCAGTGCACCTCCTATTTATTTCGCTGTTTTGAAGTCACAGCCATGTGGGGCCTAGAGAGGCTCTCTCAGAAAAGTCTCAGCCCAGGGGAGACTGAGACACCTAAAACACAGGAGAACGAGTACTTTAGAGTCTCTAATGTTTGAGGAATTCAAATTGGGAACTGATGGCAGGGTGCTGGGGGAAGTTGGGGAAAGTCTCATGGAGGTGACAGGTTGAGCTGGACCTTAAAAACCAAGTTCTTCAGGCGAGAAGGGAAGGGAGTTTTCAGCTGAGACAGTGGAAGGAGTTAGAGAATGAGGTAGTGGGGGTATCTCATGGTGCAGCCTAGGGTGCCTTGCAAAGTCAAGGTGAAGCTGAGGCGGTGATGCTGTGCACACTGCAACGCACTGGCTCTGCTTCTAGAAAACCTTGTACATGTGCCCACAAAGAGATGGGTACAAGGTGTTCAGAGCAAAAAGTTGGTAAGACCAAAAAGCAAAATAACCCAAGTCCCTATGAACGGAACAGATGAAACAGTTGCATTGCAGCAGTAAGAGTAAGAGTGAAGCAGCTATGGGTGTGAAAATCCCAGGAATGTAATTTTGAGGGGAAAAAGAATACCAGGTCATAGTAGAATACATAGAATTATGTATTCCTTTATTTGAAGTTCTCAAATAGTAAATAGTTTCTAGATACTATCATATCTAGTTAAAGTAACCCAAAAAGGGGGGGCATGGTCTCGTATGGCAGAAACCAACACAACATTGTAAAACTATTATCCTCCAATTAAAAGTTTTTAAAAGAGCAGGGTCAGGGGCACAGAATTGAGGAAAATGGTTTCCTCCAGGGGTGGGTTGACCGGCGGGGAGAGGCTCATAGGACTTCAAAGGTCTTAATAAACGTTCTGTTTCTTAAGATGAGGGATCAGTTCAAGAGTATTAGTTTTATTCCTAAAACCTTACCCTTGTCGTAAATATTCAGTATTTTATGAAGAAAGTTTTTTAAAATCGACAAAGTAGATGACACGGGAGCTGAGGCTGGAATAATTCATCAGGGCCATGCAGTGAAGTGAAGCCCCAGGGCTCCATGGAGCAATTTGGATCTCACCTTGTTCTCCTTATGTCTCCTGGAGGCTGGGACAGAGCTCAGGTGGTGGGTTGGGGAGAACACCGCCAGACTCAGACCAGAACAGCTGAGGAGTAGGGGCTCCTCTGCCCTTTTCTGGAAGCCTAAGAGCGCCGCTCTTCTCTTTTGTTTAACCAGATGCTTGTTTATTTAAATACTTCCTCACTTACTCTCCTGCTTTAAGTTTATACGGTGCTCTGGACTTTCTCCTGTTTTCTCCCCATTTCATCCTGACAGTAGCCCAGGGTGGAGTAGGTATTGCCCCACACATGCCGGTGAGCAAATTGAGGTCCAGAAGCATTAGGTCCCACAGGCTTTCAGCTCCTGAGCGGCAGTGCTGAGGCCACAACCTGCGTTACTTTCTACTGCGTATATAGCATTGTGTGTGTGGAAGTATATCTACATCAGGAGCCCCCAACCTCTTCTGAATGAAAAACTCTGTATTTCCCAGAAGCCATTGCTCAGGGGAACTCCTGACTCAGGAAGGGCGCTTTGCACAGTGCAGGAGACCTCGGGGGACAGAGCGCTGTAGACGGCTTAGAAGAGGCGCTGCACAAGAGAGCTCCTCAGGCTGAGCTGGGCACCCATTCCATGGTTTTTTCCTCTTCTGAATTTGTATCTAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGCTCTGAAGGAGGAAGGCAATGAGCTTGTAAAGAAGGGGAACCATAAGCAAGCGATTGAGAAGTACAGTGAGAGCCTCTGGTTTAGTAACTTGGAATCCGCCACATACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256:ENSBTAT00000004220:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(61.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development