GgaINT0010316 @ galGal4
Intron Retention
Gene
ENSGALG00000004110 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr20:5571027-5571554:+
Coord C1 exon
chr20:5571027-5571202
Coord A exon
chr20:5571203-5571409
Coord C2 exon
chr20:5571410-5571554
Length
207 bp
Sequences
Splice sites
5' ss Seq
CAGCTCAGC
5' ss Score
-1.11
3' ss Seq
TCCTTTTGCACTGCTTCCAGCCC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GATGACCAAAGCTCTGCTGGAGAAGCACGGGGTGAACTGGCGTGAGAAGCTCCCACCCATCCCCACGGTCCCCATTGATGCCCAGAGGAGATGGAGCGTTCCTTCTGCAGGATCCCCCACAGGAGGTGCTCCCCCTGGAAACACACCACGGGGAGACCCAGGTGAGAGCCCTTCAG
Seq A exon
CTCAGCAGAGCTGCAAACAGCAGGGCGGGCTGCCGTGCCTGCATGGTGTCTGTAGCTGGGGCTGAGAGCTGCAGGAACATGGGCTGGCTGCTCATTCTGGGTCCTTTGATCTGTGTCTTGCCTCAGGGGTGGGGTTATTTGCCTTCTGAGAGGCTGGTCTGATCTTACCACTTTTGTATGTTCTGTATCCTTTTGCACTGCTTCCAG
Seq C2 exon
CCCAGACTGCTGCTGGCATAGAGAGAGCTCAAACTCTTAAGGAAGAAGGAAACAAACTCGTAAAGAAAGGAAACCATAAGAAGGCAATTGAGAAGTACAGTGAGAGTTTAAAGCTGAACCAGGAATGTGCAACTTACACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110:ENSGALT00000006537:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051523=TPR_1=WD(100=69.4),PF134141=TPR_11=PU(11.8=16.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAAAGCTCTGCTGGAGA
R:
TGCACATTCCTGGTTCAGCTT
Band lengths:
305-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]