HsaINT0170803 @ hg19
Intron Retention
Gene
ENSG00000025772 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:15746]
Coordinates
chr20:43577371-43580643:-
Coord C1 exon
chr20:43580474-43580643
Coord A exon
chr20:43577519-43580473
Coord C2 exon
chr20:43577371-43577518
Length
2955 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCTTCTGAATTTGTATCTAGTGC
3' ss Score
5.71
Exon sequences
Seq C1 exon
AATGACCAGAGCTCTCATGGACTCGCTTGGGCCTGAGTGGCGCCTGAAGCTGCCCTCAATCCCCTTGGTGCCTGTTTCAGCTCAGAAGAGGTGGAATTCCTTGCCTTCGGAGAACCACAAAGAGATGGCTAAAAGCAAATCCAAAGAAACCACAGCTACAAAGAACAGAG
Seq A exon
GTGAGCTGTGACTCCCTGCCCAGAGTCTTGCAATCTCCCACTATCCATTTTCTTTAGAGTAGTCCTGCAAAAATTGGCATTGTTTAGCTGAGTTATAAAAATAATCTTAGGAACAAAGTATAAAACAAAATACAAGTCTTCACCTCTTAGAGACTGTTTTCTCAGCTGTATAGTGAGGGTGATGATAAAGTCTTCCTCACAACCATGAGGACTGAATGACATAAGACATGTAAAACTCCCAGCCTGGCACATAGGCATGCAGTGTGAGTTCCCTTCTCTTTCCTCTGGTAGCACTTGGGATGTAGTACTTAGGATGTTTTTGGTTGCAAAAACAGAAAGCTCAACATGGTAAACATAGTATAGGGAATTTATTGGCTCATAAAACTGAAAAATCCGAGAGAATTCAGGCAAGGTTTGCTCCAGCAGCTCAGTATATTAACAGACTAACTCCATTTTTCTGTACTTATCACAGCTTTATTTTCTGTTGTGCGTCAGCTTTGTCTTTGGCAAGCTTCCCTCCTAGTAGCAAAATAGCTATAGCAGTTCCCGGCCTCACATCCATACCCCATGCCTCATGACCCAGAGAAAGAAAGTCTTTCTCTGATAGCTCACTAGGAAAAGATAGGATTTTTTTCCCCCAAAAAACTCTAGCTCACATATTTTCTCAATCATTTTCTCAATCTATTCTGGTCTTCATGGTCACAGGCCATTCCCTGAAGTACACACCATAACCGGCGGATGAGATTTTGTGATTAGGTCACCCTGAGGCACCTGCCCCACCTCCAGAACTAGAGGGTGATGCTTCCCAGGAGCATGTACACTGTGTGAATCCCTGGAGAAGCATGAAGAAGAGAAAGGAGATCCAAGCAGCCAAAAACAGGAGATTCCTCACCTCAACTGTATGAAATGAAGAGGCCATTTGTCAGGCACTAGGAAGCTCTTTTAATGCTCCAGGGGAATGGTCCCAGCCCAGCAAGCTAGGGATTCAGGCTAGAGGTGCAGAAGGGATCAGAGATGGAGCCCTGCCATGTGTAAGTGACCTATAGGTGTTAGGGGAGGACAAGAGTTACTCACCTTCTACAGGAGAATGCCTCTCTGGTCATGGGTAGCATTCACTCTGGTTTGTGGGAGCCTGGTAAGTGTTCCCCACTCTTCTCTAGGATGAAAATGTGCGGTGCTAATGAACCTGATGGCATCAGTGCCATTGATTTCATTCTTTCAATCAGTGCACCTACCATTGATTTCATTCTTTAAATCAGTGCACCTACCATTGATTTCATTCTTTCAGGGTCACTGAGCCATGTGTTCCAAGCCATGTGTATGCTAAGCAGTGTGACACAGAGGACAGTCTTGGCCCTCAGGGAACTCTCCCTCAGTTGAGGGACTGAGACATGTAAACAGTGTCTTAAAACACAAGGAGGAGGAACATGTGCTTTAGAGTCTTAGTGTTTGAGGACTTCAGGATAGAAACTGACTTAAGTGCATGAGGGAGTCGGGGAAAGACTCAGAAGGGGTGGCAATGGAGGTGGAGCCTTGAGCTGGACCTTGAAGAAGGTCATCAGGTGGGAAGGAAGGAGAATCCTTGGCAGAGACAGTGGAGAGAGTTGGAGAATGAAAGTGCATGGGGGGAACAGTAGGAATAAGGATGACTGCAGAGTGGTGTGTTGCAGGGTGCCAGTGAAGCTGAAGCCCTACTTCAAGAGAAACCTGTGTGCATGTGCACAGGGAGATGTACCCACAAATGTTCGTAGAAGACTGTAATAGCAAAAAACAACTGGAGATAACCCAGATCTCCATAAATGGGAGAATGGACAATTCAGCTTTGGTATTGCAGCAATGAAAATGAAGGAGCTGCAGGTCTGTGCATCAACACAGATGAATCTCAGAAATATAACATTAAGGGGAAAAAGAAAAACCAAGTCATAAAAGAATACACAGACTTATTCTTCTGTATGAAGTTCAAAAACAAAGTAAACAGCAAATGATCTGTGGGTACTGTTGTATATAGTTATACTGTTTAAAAAGGTGGGGAAGAAGCACAGAATTGGGGATAATAGTTTCCTCCAGCAGTGGATTGAATTGAGGAAGGTCCCCCAGGACTTCAAAGGTCCTAGTTATGTTCTTTTTCTTAAACCAGGCAATGAATTCAGGGTGTAAACCTATAATCTTACCCTGGTCATAAATATTTAGTATTTTATAAAGATAGTTTTAAAAATTTTTGAAAAGCAGATGATATGGAGCTGAGGCTGGAATAATTAATTGGGGCCAAGCAGTGAAGGGCCTGAACACCAAGTTGAGCAGCTTGGATTTCACCATGTTCCCTCTGCTTCCTCTCCTTGAAGGCTGGAGCAGAGCTGCATGTGTTAGATGAGGGAGGATACTCACAGGCTCAGCCCAAACCAGAAATGAGGAATAGCAGGCTCTTCTCCCCTTTTCTCATAGCCCAGAAGCTATACCTTTTCTTTACCAGATATTTGTTTATTAGTATTTATTTACTTATTGTCCTGCTTTAAGTTTATAGTGTGTTCCGTACTTTCTTACATACTCTCAGATTTGACCCTGAAAATAGCCATCTGTGGAATTAGTATTGCCCTATTTTATTGGTGAGGAAATTGAGGTCCAAAAGTTAGGTAGGTCACACAAGATCTTCCAGCTACCAAGAGGCAGTGCCAAGGCTAGAACCTGGGTTGCTTTTTATCATTTATATATTTTTATGTGCATGCAAAAATGTTTTTATATCAGGATTCCCCAACTTCTTGATGAAAAACTGTTGAATTGCCCAGAAGCTATTAATTGGGGGAAGTCATTAATCAGGAAGGATGATTTACAGCAGGGGAGGAAATCTCTGGGAGAGAGGATTGTAGTCAGTTTGGAAGGGACGATGCTGAAGAGACCTCACTGATCTCAGTTGGGTGCTGCTCCATGGTTTTTTTCCTCTTCTGAATTTGTATCTAG
Seq C2 exon
TGCCTTCTGCTGGGGATGTGGAGAAAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAGGGAAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTGTAGTAACCTGGAATCTGCCACGTACAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000025772-TOMM34:NM_006809:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(61.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)