GgaINT0096250 @ galGal3
Intron Retention
Gene
ENSGALG00000016037 | SPAG1
Description
NA
Coordinates
chr2:134066786-134069610:+
Coord C1 exon
chr2:134066786-134066961
Coord A exon
chr2:134066962-134069468
Coord C2 exon
chr2:134069469-134069610
Length
2507 bp
Sequences
Splice sites
5' ss Seq
ATCGTATGT
5' ss Score
5.94
3' ss Seq
GTGATCCTTTCGTTATGTAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
AATAACGAAGACTTTAATTGATCAAGATGGTTCTAGTTGGAGGGAAAAACTGCCACCGATTCCAGTTGTCCCTATTGCTGCTCAGCTAAACAGGTGGGATGGAGGAAACTTTACTTCAGAGGTTAAGCCAAAAAGTCCCACAGATATCAACAAAGAAGAACAGTTGCAGATGAATC
Seq A exon
GTATGTATAGCTAATGCAGATATATACGTACTAGAAAAGACTTTTAACCAAAAAATGGAATACAATTAAATATATTAAAGAAATGACTTTAGAAAAAATATTTCTCAGAGAACTTTGTGAAAAGTAAAATTAGATGATCTTTTATGTGATTAGGTTTGATGCACTTTATAGAGCCACGGTTAGGGTACTTTTTTTGGAGGCCAAATGATGCAGTTTAGTTTGCAGCATGTTATTTCTGAAGTTACATAAATATAGCAGAAATGCTCATCAGCAGTGTGTTGAGTCCTATCAGAAGTGTCACTGGTTTGCCTGACCTCGTACTACAGCAGCTAAAACAGTTCTTTCCACCCCCACACCCCCCAAAAAAAACCAAAGTAGACAGAAACCCACCCTCAGTAGCATAACCAGCTGCATAATCTGTAGCCATTACTTAATTGTTGATAAAAGTATTACTCAGCTGTTCAGAGCAGAACAAGTCGACTTCTATGTGGCCAGCATGTAGTGAAATGGATTACAGAAGAAAAATTCTGTTGTTTTTTTTTTATTACAGAATTGAACTTCAACTATTGTTGAAAGTGGCTATTTGGTAATTACTCTTAAGAGGCTATTTGTGGCTATTGGTAATCACTCTTAAGAAATGTTAGTTCACAGACTTTTTATGTGCATGCACTGAGTGCTTACCTCCAGTTAGGAGACTTTCCTCCCTCTGATTTATTCCTTTTGGTGGAGTTTCCATCTTTCTTGCTCCAGTAATTCAGGTGAAGGAACCTTTCCAATTCTGCTTTTATTGACATTAAATCTTTTTACAAAGGCCTTAGCTATATCATTTTTGATTCTTCCTTGACTGTTAATTGGTTCCCTTATGTGTTTTATGAATATATAAAGAAAATAAGCACTGAAGATATCTATTCTTGTTTAACAGAGAGGAGAATGCACCGCATAATTGTGTTGCTGGTCTAATATTTAGCAGCGATAGAGTTGTCTCTCTACAATCAATTACTGCATGAATGCATACCTTCAAATAATCTGTACTCGGGCACTACAGATTTAAAGACCTTAACACTATCTGGAAGGTCATCCTCAAACTTATTTGTGCTTGATGTAGAACAACAGATAGCTTACACACACACACACACATGCATTTATGAGAATTTGACATTTTTCTTGAGAATTAAGTGTGGATCTGGAAACCTTGTAACTTATGAATAATCTGAATAATAGCATATATAGAACAGTGGTAATGCTGCAGGAACTTAGTTTTTTGTTTAAGGGACATGAAGGATGTCAATGTATATTTTAAGCTCAATTAAATCCATGAAAGTTTTACTGTACTTTTTAAAACGTTCAATGACTGAAGCATTTACATTCATTGTGCATATTGTTACTGATCTATCGCTTAAGGATTGGACAGTTTAGCACTTAATTTTGAAATGAAGTAGCAAACTGGTATTTTACATGAGTGTGTTGCTATTAAAACAATTTTCAAGCTAAGCTTTTATATTTATGCTGCAGTGATTGTACTCTGGGCTTTTTTATTAAGGGTGGCAATTTGCAGGGCTTTTTTATTTCACTGTATAACCAATGTACGTTGTCTAAGCCATTTAACTTAACTAGGAGGGATCAAATTTACATCTATACAACCTTGTATAATGTTGCGAAGACAGATAATTTGAAGATCATCACAAAGATAGCAGTTCCCTAGGTCATGTCTAACCTGTTCTGAAACTTCATTGTTAGCCATCACTGTCTCCACAGATTGTGTTCTGTGAGATTTTGATATAAAGCACTTCTCAGTCTACTTCAGGAGGCATGAAAGTGCAATCAGGATTGGTTTTCCATTGTAAACATTAAAGTTGTGGTCTAATCCAGAAGCAGGTGTAACAAATGATGTGGAAAGAAAGACAATTATGAAAGAACAAAACATTTGTATGTATATGTGTAGTTTGGTGTTTTCCAGTTACTTGAAACGTCTTTATCATAAAAGTCATTAACAGAATATTGTTGATGTCTCACTCACTCCAACTGATGTGATTGTTTGTCATTGTCAGTTTAACATAGAAATTGTGATGGATTGGTTGCTTGCAGAAAGAATATTAGGTAACATTGTGGCCTTTTCGGTGTGATGGTGAAGATTTAGAAGGCTTTTAATGCTACTGATTACATTTCCACCGCTGTAAATAAAGCCAGTATTTCAATGGTTCGTCCCTCTGTACCACAAAGAGCAGGTTGACAGGAGAAGATAAAAGTAGAGTTGCCTGTTGCATTCACATTATTTTCAGCAGAAATAGTTACCTTGGTGTATTGGAAAGTATGTGTTATGTCACATGCATGTATGTACGTTCATACCTTTCTTATAGCATCAGGAAGATGTGGGACAGAAATCAGAATGTGCGAACTGATAAAAATACTCCTGATGCCAGGCAGTTATTCTTAGTCTGGGCAGATTATTCAGTTACCTGTAATGAACCAACCTTCTTACGTAACACTGTGATCCTTTCGTTATGTAG
Seq C2 exon
GTGAGAAAGCTGAGGAAAAGTTCAGGACATTAAAAAATGAAGGGAATGATTTTGTGAAGAAGGGTAAATATGATGAAGCTGTAAATAAATACAGTGAATGCTTGAAGTTAAATACCAAGGACTGCACAATATACACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037:ENSGALT00000025838:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(60.0=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]