GgaINT0096330 @ galGal3
Intron Retention
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34257093-34257585:+
Coord C1 exon
chr2:34257093-34257255
Coord A exon
chr2:34257256-34257521
Coord C2 exon
chr2:34257522-34257585
Length
266 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTGTTTGCTTCTTGTTGCAGCAC
3' ss Score
9.57
Exon sequences
Seq C1 exon
GAGCTGGTGATTCTAAAGACAGCCTGGTTATCATGGCTCGTGTTACCACATACATGGGCTTTACTATTCCTCACTTACTGAGAAGTGCCTGCAGACTTTGTCCTGCTCATTCTGCACTGGTGGCGTTGAGGCACTCTGCTTCTTGTTACTGTACAGCGAATGG
Seq A exon
GTAAGTTATCCATCTACAAACACTTCTATTTTTTGAAGAGAACGTCACGATAACGCTTTGAAATAACAAATGACAAATTATTACAGACCTGTAAATACTTTGTTATCTCCAAATGTATATTGCTGCATATAATTCTGATTCAGAACTATGCCGTCTGGAATGTACGCTGGATTACACTGACAAATTCTTGGATGAGTAGAAATTCCTACCAGTAAGACACAGTAGCACAGCTGTCAAGATGACAATTTGTTTGCTTCTTGTTGCAG
Seq C2 exon
CACAATACAATCAAAAAGGAAAATGGATCACCTTGAGAGAACAGCAAATAATTTTCGCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239:ENSGALT00000018329:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGATTCTAAAGACAGCCT
R:
TCCTGGCGAAAATTATTTGCTGT
Band lengths:
224-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]