HsaINT0119163 @ hg19
Intron Retention
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD-binding domain containing 1 [Source:HGNC Symbol;Acc:25128]
Coordinates
chr3:16312452-16313229:+
Coord C1 exon
chr3:16312452-16312578
Coord A exon
chr3:16312579-16313165
Coord C2 exon
chr3:16313166-16313229
Length
587 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AATTTTACTTTCTATTAAAGCAT
3' ss Score
6.11
Exon sequences
Seq C1 exon
AAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAG
Seq A exon
GTGAGTCATTAAGACTTCTGTGTCATTTGAAGTTAATTTTCAAAGAGACCCGACCTGCTGATGGTTGTGGGAGGCATATCAAACTCCCGGAAAGGTAACACCTTAGCTTCAATGTGCATGCTGTCAGGTTGTTAACCGTTTTTTTTGTCTGAGATGGAGTCTTGCTCCGTCGCCTGGGCTGGAGTGCAGTGGCACGATCTTAGCTCACTGCAACCTCCACCTCCTGGATTCAAGTGATTCTCCTGTCTTAGCCTCCCGAGTAGCTGGGATTACAGGCGTGCACCACCACACCTAGCTAATTTTTGTATTTTTGGTAGAGAAAGGCTTTCTCCATGTTGGCCAGGCTGGTCTCGTACTCCTGACGTCAGATGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCATGCCCGGCCAAAACTTTAGTTAGACGGGCAGATACTCACTGGCCATTTTATAGGATCTGTAATGTTACACTGTATTTAGGATAACCATGATATTTCAGGAAAAACTAATTTTATTATTTTTATGAGGATAATATGTAATAACCTAATTTTACTTTCTATTAAAG
Seq C2 exon
CATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-OXNAD1:NM_138381:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF063668=FlhE=PU(65.2=75.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGCCATGGCCTGTG
R:
CTCCCGTCGAAGGACACTTG
Band lengths:
191-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)