RnoINT0106307 @ rn6
Intron Retention
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8212532-8213020:+
Coord C1 exon
chr16:8212532-8212652
Coord A exon
chr16:8212653-8212956
Coord C2 exon
chr16:8212957-8213020
Length
304 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTTCCTTCTTTTAAAAAGCGT
3' ss Score
6.54
Exon sequences
Seq C1 exon
GCAGCACCATGGCCCATGTCTTGATTCCTGGGTTGTCTCGAGGCTCTGTGGGAGCCATCTGCACTCAGGCTGCTTCGTGGGCACTGCCTACCAGCACTCTGCGTTCCCTTACCTTAGCCAG
Seq A exon
GTGAGTTGTCAGCCTTTGGGGTCACGTGGGTTGATTCTCAGAGATCTGATGTGCTGATGGTTTGGGGGTGGGGGGGTCCTTCAAACTCGAGAGAGACAGATGGCATGCTGACTGCAGTGTGCATGCCATCAGATTGGAAACTGTTGGGTGTGCAACTTATCACTGGTAGAGTTTCAGTATTTCGTACAATCCACAATTAATGGTATTTTCAGTAGCCATGATTTGGCGGGGTGGCAGGGGAAGCTGGTTTTATTATTTTATAAGGATAATGCTTAATAACCTAATTTTTCCTTCTTTTAAAAAG
Seq C2 exon
CGTAATGAGATCCAGAAGGAAAACTGACCACCTAGAGAGAACCGCCACTGTCCTCCGCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760:ENSRNOT00000026751:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]