GgaINT0096332 @ galGal4
Intron Retention
Gene
ENSGALG00000011239 | OXNAD1
Description
oxidoreductase NAD-binding domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001186567]
Coordinates
chr2:34816186-34820564:+
Coord C1 exon
chr2:34816186-34816292
Coord A exon
chr2:34816293-34820422
Coord C2 exon
chr2:34820423-34820564
Length
4130 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TGTTTCTGACCAATTTTTAGGGT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTAATTTCACAAGCCAAAGTGTGTGGCATCACCAATGAATCAGAGACAGTCAAGAGACTACGTTTGGCCATCACAAATAAAGATTTTACTTTCAAAGCGGGACAGTG
Seq A exon
GTAAGACCTTATGACATATAAGGGAAAAAATCACTAGCCAAAGTGCACTGTATAAAAGTATTAATGGCCTCTGATAATTGGGCACTGAAAAATGGTAGTAATTTATATAATAGGATGTTGTGATAGGGCAAGGGGAAATGGGTTCAAACTATTAAGAGGGGAGATTTGGATTGGATGTAAGGAAGAAGTTTCTTAGAGTGAGGGTGGTGAGGCACTGAGCAGGTTTCCCAGAGAGGTGCTGGAAGCCCTGTCCCTGAAGATGTCCAAGACCAAGCTGGACAGAGCTCTGAGCACCTGATCTAGCTGTAGGTGTCCCTGTTCATGGCAGTGGAGTTGGACTAGGTTACCCCTAAGGGTACCTTCCAACTCAAACGTTTCTATGTCTCTAAGATGTTTTATTATTCATGGCTCAGAGGAGATGCTGTTACATGGCTAATTAGTATTAAACATTCTAATACTTATTTCTAAAGAGCAAAAGTATTTTTCTTTGGCTTATATGTGTTACAAGACTTCTTCAATAGTACTTTAGGATAGAATACAATAGGATTTTTCAATTGGGAGGGGCCTATAAATATCATTGAGTCCAACTGCCTCTGAAGTACACTTCATTCTGCAGGCTCTCTACAGTTTTTATTTACCAGTTGTTTGTTTTTCTTTTTACAGTAGAGCAGGGACTGCTGCTGATGTGGAAGTTATTAGTATTTTCAGTTACAATTTTATACTTAAATCAGAATTGCCTGTTTGTTTGTTTGTTTTTTTCCCCTTGGAAGTTTCATCTCTGAAAGGAAGGGCCTGGTAAGGTAGCTCCATATAGAAATACAGGCTGCAAACTTGAAAATAAAGTCTAATTGCTAAGCCTCGGAGGTAATTATCTGATTGCTTAAGCAAATGTACACCTTATTTTCCACCCCCGCTGTAGAAACAGAGTGGATTTTCATGTTTGTCTTTTTTCTTATTAAGAAATGCTCCCACTCCATCACTTTTTTTCCTCCCCCTCAAAGATTAATTAAAAAATATGAGTAGTTGCTTTTGGCATTGGTCATTTAAAAGATTCTTAAACTTCTTCTTGGCTTAGGCCATCTGAAAGTGGTTTTACTGGAATCAAACTATAGCTGCGAGGGTATTAACAGCATATGTTACTCTTACAGTGTTAATATGCTGGCTTTTAAATTTAGAACCAGAACACAAGATGTTGATTGCAATAATTTGTGTTTGTGGAGTAATTTGCTGCAGTTTTTGCACATGTGCAGTGACTCATATTAAAATTCTCGCTTGCCCATACTGAGAAAGTTCATTTACCCTCCAAAAATGCTTTAGCAATTATCATGCTGAAAACTGAAAGCTTTAATTATAATTACTCTTTTTCATTTTCTTTTTCTTCTAAAGTGTTCTAATGCTATTGTAAGGGATACAACAACTTTTCTGTACTCGAAGCTATAAACTGTGGTCACATTTTTTGATGAGTGGTACAAAATACCAGGCCACAATTTCCTGAGTAGAAAAGGCTAATTTGTTAGTATCTGCTATAGCAGGATGTTGCAGCCAAAGATTGTCACTAATATGTATGTGTATATGTATGAAAGTGTTTTGTTTAGCCAGATTTTCAGAATCAAAGGTGAATTTGTTTTGCAGGCGTGCTGGTAGATGTTGGCCTTTATCTGACTTTAAGTAATAATGAAGACTTGTTGCTGTTATCTGTTTTAATTTCCTAAAACAAGCACTGAGGTGTATGCATGTTATAAATAACTTAGAAGTAGCTCTATGGTTTTGTTTCTCATCTTCAGCAACTGCTAATAGTTATTCTTTTCTGAAATACTTGGCTTAGGTAGCCCTTAAAAGGAAGAAAATGAAAAGCAACCCAAAGATCTTCACAGTTCTACCTCTTTTTGTGCCTTTTCTTTTTGTGAAGTTATGTAATATGTTCATTTTTTCCTCTCAGTTCTTTTTACTTAAGCTGTCACATACTGCATTTCATTGCGGCCTTCCCCTCCTTGCACACAGCTGAGACATCCCATCAGAGATACAAACTAGTCCACAAGTTAAAGTATACTGTGTTCTGAAATCTCTCATCATGACTTAATTGGGAAAGAAATGCTAACATAAAAAGAGAAGTACATTAGCCATGAAGAACTGACCCTTATATGTCAAGGAAAACGTAACTTGAATGTAAGGTGGTGTTTTACAGCATGAATATAATTTATTATTCTTTTCAGTGGTCTGAAGTATAAGGTAGTTTTCCACCAGAGGGTGGTAAAGAGCTGCAGTAGCTTCTTGAGTCTTTCATACAGTAACTGCTGCAGGGGAACAATCATCCTTTCATGTCTTTGGTTCTGACTGTTAGAGATGCTGAGCTTTATTGTCAGAGGGGCTGCAAAAATAGAGGATAGCAAAAAAAAAAAAAAAAAAAAAACAAAGTGGAATGCCAGATTTTTTGGATCTGTTGGTCTTCTCAGGTGTTGGTGTTTGTCTTTGCATTTGCAGTGAGCTGACAATTGCACTTCTACAAGCCATCAAGTTTATGAGCTTGTATGCACCAGTATCACCATAGCATTGTGCACTACTCACTTCAAGAGAAAGAGAGGATAGTTTTCTTTGGAGGGTGAAGCTTTGTAGGAAGTCACCAGGAAAGATTTCTTTTTTCTTCCAGTCGTAAAGCCAGTCAAAGTGCTGCTCTCCTCCCTCATTTATTTATTTACTTTATTTTTGTGGTCTCCATGCAGAAGACAGCCTTGGTGCTTAAAGAAAATATGCACTGGAGGCCAGCTACTTCATGTTACATCTCATTTAACTAATACTGAGCTGCCTTAACTACAGCTTGCACTGAGAAATCATTACAAAGTACTTGGCATTGCTTACCAGTGCAGTTGTTCCCTAAGTGGAGCAGCACAATTGATTTTAAACGTTAGATTTATTTTGAAATACAGCAGTTTTGTTATCTGCTATAGAAAATTGATGCATTTAAGCGTTTTGACAACACTGAGGAGCTTAAGTGTTAGATTATATACTAACGTCAAACTTTTCCTACTATTTGGAGCGTCAAAGCCTTACTTTCATGGAAACAAATTGCAGTTCATGCATAGCAATGGCTTGCCTTTTATACTATCCAGTTGCTGGTTTTGCAGAAAGTTAGCCGTGTGTTCTAACTGCTCATTTCCAGAAACTGATGCATCATTTTCTTTTGCTTAAAAGGAATTGTAGTAATTTATTCCCCTTTACTGCCAACTGGAAAAAGACATCTGCCACCAGAGGGCAATGCAGTTCAATAAGTAAAGCAGTTCTACTTGTTCTAGTAACTCCACATAAGGAATTTTTTTACTCTTTTTTTTCCTTCAGGTATTTCATCTTCCCAAGAAATGAAAGTGTTAATTCAAAAATATATTCCCCAAAGTTAGTTTTCCAACCTTCCTTTGTTTGAGAAAAAAAGGAAATAACAAGGTGTAACGCAATGGAATACACAGCAATGACAGCAGAGTAGCAAGACCCCAGGCTGCAGCAAGTGAGGACTTGCTCAAATGCAACAGCCATGGGCTCAGAAATAAAGGAAGGAAGCTCCTTACCTTTGGAAGACCCCAGATAGGCAGGGATCTCTGGAGAGATGCCCTCGCCTCCACTGCCAACCCTTCAGTGAGGTCTGGGAAGGGGTGGATCCTGGCTCCAGCCCTTCCGGTCACTCAGGTGCATTCCATGCAGCTGAGCTCCCCTGGGTTGGCCCTGCCTTCCTACCAGGTGCTCAATCACTGGTTGGAGCTGTGTCTTAGCATTTCCACTACACAAAGGCACTGAAAAGAGTGGGTTTTAAGCCACTCTGTTGGGCCTTATGATGTGGGTTTTTTTGCTGTGTTTTTACTGAGTAAATTATTTACTTTAACACTTATCATTCTAATCTGCTGCATCTAATGCTGAAGGCAGAACAGATTAAAATCCTGGCGGTACAGTAATGGTGATGATGTTTGTAGATGACAGTAAGTCGAAGAAAGCAGTGTTACTCAAGATTAGTTCAATTTTTTGGAAAAGCTGTGTTCTGGAAGTGAAGATGTTTTTGTCCAGGACACGTAACCGAAACAAAGCCAGCAGTTTTGTTTTAGTCACTGTGTTCCATGTTTCAATTTTTGTTTCTGACCAATTTTTAG
Seq C2 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239:ENSGALT00000018329:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PU(35.2=88.9)
A:
NA
C2:
PF0097019=FAD_binding_6=FE(51.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]