RnoINT0106309 @ rn6
Intron Retention
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8215815-8217204:+
Coord C1 exon
chr16:8215815-8215921
Coord A exon
chr16:8215922-8217062
Coord C2 exon
chr16:8217063-8217204
Length
1141 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTGTTCGTCCGTCCTTCTAGGGT
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTCATGGCTGCAGCTAAGGTGTGTGAGATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTCAAGGCTGGCCAGTG
Seq A exon
GTGAGTGCAGTGTCCCTTGTCAAGTGTGTGGTGTGTATATATGAAAGTGCTATCAGGCAGGAAGTATACTTTCTTCTGGAAAGGACTTCTCCACCAGCAGAGAGGAATTCTGGGTCATTTCTCTTTGGACATGGACAACTTGATTTCTTTTTTGGTTGGAACCCATGTGTCCCTCTGTCTGTCTGAAACCTACCTTTTGTAGTCCAGTTTCATACGAAGCAAAGTGCTGATCTGGGGAACCATAGCTTGACAGTTGTGTCTGCAGATAGTCACACTGATCTGCTCCAGTTAGGGTTGCTGGGCACTGATGCATTTCCAAAAATCAGTCTTTGTTCAAATAGAATAGACAGAGTGGCTGAAAAGGGCCCTGGCCTCAAACTTGGAGGTCTGTGTGCACCACCACGCCTGGCCACCTTATCGTTTTGAGAATCATCCCTCATTGAACCTAGCACTCAAGTTGATTAAAAAACAAATGAAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGGAAAAAAAAGAACCAAAAAAAAAAAAAACAAATGAAGATAGACGTTAAGCTAGCCTTGCATTCTTGGAATTTCCTGTCTTTATTTAAACGGATATTGGTCCTGTTTCTGTTCAGTGACTGATTATCAGGATAATATCAGCTTCATTGGAGTAAGTGCCACAGTGTCTTGTCTCTCCTGTTTGGGGTAGTTTCTCAAGGGTTGCTTTTGATTCTACTTTAAGTGCATGTGGCAACTCCCCAGTGGTGCGGCCTGAACCCAAGTTCTTACTGTGATGTCTTATAGTTCAGTTCTTTGAGCTTGTGTAGATCGGATCAGGTTTTTCCATTTCTTCTTGGTGCATCTTTGATAGTTGATATCTTCTTAGTAATATGTGGTTCATCTAAATTACATCATATAATAATTCTTCATAATATTCATGAAGAATTTTTTAATTTTTGTAAGATTAGTTATACTTGTTCATCTTTTATTAATTTAGCAGTTGATGTTTTTCTTAGTCTAACTAAAGTGTTACCAACTTTGTCTCATCGCCTGCTGCTGACAGGTTTTAAATTATTGCAACAGTGATGGTTTGTTCGTCCGTCCTTCTAG
Seq C2 exon
GGTTGATTTCTTCATCCCAGGAGTTTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACAGCTAGAACGAGAGAGAATAATAGAATTGGCAGTGAAATACACGAACCATCCTCCTGCTGTCTGGGTTCACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760:ENSRNOT00000026751:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PU(43.8=88.9)
A:
NA
C2:
PF0097019=FAD_binding_6=PD(54.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGGCTGCAGCTAAGGTG
R:
ATTGTGAACCCAGACAGCAGG
Band lengths:
246-1387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]