GgaINT0096708 @ galGal3
Intron Retention
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65871278-65872730:-
Coord C1 exon
chr2:65872586-65872730
Coord A exon
chr2:65871415-65872585
Coord C2 exon
chr2:65871278-65871414
Length
1171 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GTTTTTTCCTTCCTCTGTAGGTT
3' ss Score
12.17
Exon sequences
Seq C1 exon
GCACATGAAGATTCACGAGAAGGATCCAAACAGCACGGCGAGCACAACTCCCCCATCTCCACTGAAGCGCAAGCGATTGTCTTCAAAGCGGAAGTTCAGTCAAGATGCTGAGATGGACAGAGAGGAAAGGACACCTGCAAAAAAG
Seq A exon
GTTTGTCACCAGGCGTGAAGCAAAAGGCTTTCCTGACTGCCTCCTATGCTTCTGGCCATTGTGCTCATGCAGTCAGCACGGGAATATTAACATTTGGTCTCGTTACAGCCCTGTAAGATTTAAGATACCTCTGTTTTTCCTCTGTAGCCAGCGGTGTTGTCTGAAATGGAAAATGCACTTCTAATTTCAGAGATTGAAAGAATTATTGTTATTCTTTGTTGTTTAAATTTCTCATATTGCATGTCGATTACATATATGCCTATTGATTGCATGTATTAGCTAATGTTGGATGAGAAGATGACCAACTATTCTTTCACTACTGCTGTTTTATTCCCCATTTTATTTCCTGTTTAATTTATAGTATTCTTGCAGGGTGGTGATTTGAACTTGGAAAAAAAAAAGTGTTTACTTAAGAAACAACTTAAGTGCATTTTTGTTATGACTGGAGGAAAAAAAAAATCTATAGTATGCTTCCCTTTTGCAGTAGCATAATCCTGCATTATTTGAGTTGCAAGAGCAACCAGAAAATATTTATGTGAAGGCTAGACATTTCCATTAGGGTTTTGTTTATGAAATATTTTATTGCATTTCAGTCATTCATCCAAAACGTGTGGTGGCTGCCAAAATTACCTCAACCCTTTCTACTTAGTCTCTAAATGGCAAACTAGTAGCAGCTCCATGTAGCTCAGTATCCTTGTTTCCGTGCATGCTTTTCCTCCCTGTAATCAGAAGAGGGCTATAGAAAACATGCACAAGTTCATTGCTTTTCCATGGACCTCTTGAGCTAGCAGTTGGCAGTATTTCAGTGGCATAAATAATTTAGGCTGACAGCTCGCCTGGCTCTCTGAAGGAGGAGGAATGCTGGTTCAGTGGTATATAAACATACGGGCTTATGAGTTGTTCAAATCGCAGTTTCTCATTAGAACTGATGTATCTGTGACTTGGCTGCGTGCTTCATCTCTTGGTGAGCCTCCTTTCTGCCATGCGTATTCTCACGTGCGCTGCCTCTCACACTCTCTGTGTTGCCAGAATGAGCAATTTCTGGACACCTGCAGCAAAGTTACAGATGGAACTCACTGCTTTGCTTTTCTTTTTTAACTTTGAATGGGTCGCGTGTTCGGTTTGTTGCTTCAAATTCGGTCTGGTGAGGTGTTTTTTCCTTCCTCTGTAG
Seq C2 exon
GTTGTCGAGGATGGTCAGTATGGTGAAGGGGATAGGAAAGAAGATGACGCTTACCATTGTCCAGTATGTTTCAAAGACTTTTTTTGCAAGTATGCGCTGGAGTCCCACATGGAGACACATCCAGATAACTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799:ENSGALT00000037239:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATGAAGATTCACGAGAAGG
R:
AGTGAGTTATCTGGATGTGTCTCCA
Band lengths:
279-1450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]