RnoINT0129333 @ rn6
Intron Retention
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27571479-27572352:-
Coord C1 exon
chr17:27572208-27572352
Coord A exon
chr17:27571616-27572207
Coord C2 exon
chr17:27571479-27571615
Length
592 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTC
5' ss Score
0.78
3' ss Seq
GCTCTGTGCTTTCTCCTAAGACG
3' ss Score
5.66
Exon sequences
Seq C1 exon
ACATATGAAGATTCATGAGAAGGATACCAACAGTACTACAGCTGCAGCCCCTCCGTCCCCTCTGAAGCGTAGGCGGTTGTCCTCCAAAAGGAAACTGAGTCACGATGCCGAGTCAGAAAGAGAAGACCCAGGACCAGCTAAAAAG
Seq A exon
GTTCTCTGAGTTTGTTGCACTGTGTGCTCCATTGCGTGGCTTTTGGCAGAAATATCTCTAGCCTTCATTATCACAGTGTGGAGACTTGGAGGAGATCAGTCCTGAGCCCTTTGACCTGTGTTTCCCTGAACTGTTTTTTGCAAAGTTTCCGGGAAAGCACCTATATGTGCTTTCTCTTTAGAAGCCCCATGTAGTGCATAGATAATGATGAATTCCCAGAGTTGTTCACATGCTTTTTACATTTTCTGTGTATCTGAAGTGGAAGCTTTATCAGCATTAGAGACTCCTTTTGTCCTTGTGTTTATTCCTAATGCTCTGGAGACAGTAGATGCCCCTAAGTCCTTGTTAATTAGATTCGAGGACTGAGAAATGGGTGGGGAAATGGGTCGATGTGTAGTAGAAGTGCTCCCTGATAGAGTGGGTGGATGGATGGTGGGGTGGGTGGGTGAATGGATGGATGGATGGGTAGTCAGACCTTGGTACTGAGTGAAGAATGTACTCTTGGAACTTTCTAGACTAGTGTTAGCCTTTCTTCTAAAGCAGACCTGTGTGGGAGCCTCCCTGTTAATGCTGCTCTGTGCTTTCTCCTAAG
Seq C2 exon
ACGGTTGAAGACGGGCAGTCCAGTGGCTTGGACAAGATGGCCGATGAAACCTTTCACTGCCCGGTGTGTTTCAAGGAGTTTGTTTGCAAGTATGGACTGGAGACCCACATGGAGACTCATTCAGATAACCCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701:ENSRNOT00000060218:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGATTCATGAGAAGGATACCA
R:
CTCAATGGGTTATCTGAATGAGTCT
Band lengths:
278-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]