HsaINT0143336 @ hg19
Intron Retention
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:10449]
Coordinates
chr6:7211037-7211942:+
Coord C1 exon
chr6:7211037-7211181
Coord A exon
chr6:7211182-7211805
Coord C2 exon
chr6:7211806-7211942
Length
624 bp
Sequences
Splice sites
5' ss Seq
AAGGTCCTC
5' ss Score
-0.12
3' ss Seq
CTTTTTTCCTTTTCCCTCAGATG
3' ss Score
12.18
Exon sequences
Seq C1 exon
ACATATGAAGATCCATGAGAAGGACCCTAACAGTGCCACAGCCACAGCCCCTCCATCTCCTCTGAAACGTAGGCGATTGTCCTCCAAGAGGAAACTGAGTCACGATGCCGAGTCAGAGAGAGAAGACCCAGCACCAGCTAAAAAG
Seq A exon
GTCCTCTTGGCTCCCAGTGCAGATTCACCTGCTCAGGGGACTTCTGTCAGAAATACCACTAATCTTTATTTTCTCAGTGTGGAGACTTGGCAGACATACATCCTAAGCTCTTAACGTGTGTTTTCCCATACTGTTTCTGTAAAGTGTCTAAGAAAAGAGTACCAGTGTGCACTTCCTCTTGAGCCCCTCTGCTGAGCCCAGAGATGAAATGAAGAGCTTTTACAATTGTTTCCATGCTTTCTACCTGTTTTTTCTAGCTAAAGCGCAAGCTTCATAAGCATTCGGGACTCTTTTGTCCTCACTTTTTTATTACCAGTGCCTGGCAGATACCCGGTGCTGCAAAAGTACTTGTCAGGTGGGTGGGAGGGTGGGTGGATGGATGGATGGACAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGTAGCGTTCTGGGAGTATTTGTTGTGTGAATGAATGAATGGTCAGGTCCTTAATAATCAGGATTGGATAATGCAACCCTTGCCTTTTATTATTGTAAATCTCTGAATTTAGCATTGGCCTCTCTTCCGAAGCCATCCCATGTGGGAGACCTTCATGACTTCACTTTTTTCCTTTTCCCTCAG
Seq C2 exon
ATGGTAGAAGACGGGCAGTCAGGTGACTTGGAGAAGAAAGCTGATGAAGTCTTTCACTGCCCAGTATGTTTCAAGGAGTTTGTTTGCAAGTATGGACTGGAGACCCACATGGAGACCCATTCAGATAACCCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-RREB1:NM_001168344:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF047109=Pellino=PD(7.8=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGATCCATGAGAAGGACCCT
R:
CTTAGTGGGTTATCTGAATGGGTCT
Band lengths:
278-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)