GgaINT0097801 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31593020-31593898:-
Coord C1 exon
chr2:31593764-31593898
Coord A exon
chr2:31593114-31593763
Coord C2 exon
chr2:31593020-31593113
Length
650 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
3' ss Seq
TTACCCCATCCTGCACACAGGTA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GAAAATTCAAGAGAAGAAAACAGAGGTCTGGTTCACCAGATCTCCAATGAAAGCAGACTGTCTATTGCTGACTCTCTCACAGAATTTTTTGATGCACAGGAAGTCCTACTGTCTGCTAGCTCTTCAGAAAATGAG
Seq A exon
GTCTGAGCATTAAGGTTGACACTATTCTTATCTCGTTCATTATCTGCTACTCGACATGTGGCCCTTCAATGTGCTAATTGCACATCAGATGATTTGACAAAAAAAAATAAGTTAATATGCTGCTTGTGTTCATTTGTTATCTCTTCACAGTTGAATGTAAAAAAAAAAAATATGGAGAAGTCTTATATGCACATTGAGGAGAATGGCCAACAGGTAGCTAATATGCAGACACTGCATATGTTGTATCATCTGCCTTGAGTCACCATGCAGGAGCTAAGGAAACTTACACCTGCCCTGGAGGTATACCTCAGGGCCAAGACCACACTTAATAGCTCACTTCTCTGGGACTCCCTAAACTCTTGGTGTTTGATGTGGTGAAAGCCCTTTTTTTTTTTTAAGCTCTGAGGCCAAGATGATGAAGCACATTTTCACTAAAATAAAAATTGAATTATCACTGATGGTAATCATTCCTAAAGTATTTAGTCCTTAGGCCCACTTAGTACATTTCTCCAATACTGAAACACAGCTTAAAAAGTTCAAATCTACAGAAAATATTAATTGCAGCAGAAAGCAACAATTTCTACATGCACGTGGAGTTACTTTAATGGGTAGTTAGTAACACATGTCTTATTACCCCATCCTGCACACAG
Seq C2 exon
GTATCAGATGATGACTCATACGTAAGTGATATCAGTGATAATGTCTCCGAAGATAACCTAAGCAATGACATAGAGAATGAAAGACAAACTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGAGAAGAAAACAGAGGTCTG
R:
AAGTTTGTCTTTCATTCTCTATGTCA
Band lengths:
222-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]