HsaINT0118631 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24880309-24882032:-
Coord C1 exon
chr7:24881898-24882032
Coord A exon
chr7:24880403-24881897
Coord C2 exon
chr7:24880309-24880402
Length
1495 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
3' ss Seq
TTATTTCTTCTTTCCCATAGATT
3' ss Score
11.54
Exon sequences
Seq C1 exon
GAAAACTCCAGAGATGAAAACCGAGCTCTAGTTCATCAGCTTTCTAATGAAAGTAGACTCTCCATCACTGACTCCCTTTCTGAGTTTTTTGATGCTCAGGAAGTTCTGTTATCTCCAAGCTCTTCAGAAAACGAG
Seq A exon
GTTTGAGCAATGTTTACAGTATGGTGCCTCAAAAATCTCTCTTGTTGCTTTGCTGATTAATCTGTTCAGTAAATAATCCATCATCAGAAACACTAAACTCAGTTGCCCTTTGTAGTCATTATGTTCTGAGAGTTCTCCCATAACTCATACCCAAAAAGTATAAAATGATACTATATGTGAGAAGAAAAAGTAAAAGTAGAGAGCATTGGATATTTTCTCATTTCTGTAACTTGATATGTTAAATTTGTTATACTTTTTTTTTTTTTTAAACAGAGCCTCGCTCTGTTGTCCAGGCTGAAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCGGCTCCCAGGTTCAAGTGATTCTCCAGCCTCAGCCTACCAGGTAGCTGGGACTACAGGCACGTGCCACCGTGTCTGGCTAATTTTTGTGTTTTTAGTAGAGACCAGGGTTTCACCATGTTGGCCACGCTGGTCTCAAACTCGTACTCCTGACTTCAGGTGATCCGCCTGCCTCAGCCACCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATAGTCTCATTCTGTTGGCCAGGCTGGAGTGCAGTGGTGTGATATCTGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCGTACTTCAGCCTCCCAAGTATCTGGGAATACAGGCGTGCGCCCCATGCCCAGCCAATTTTTGTATTTTTAGTAGAGATGGGCTTCCGCATGTTGGCCAGGCTGACCTCGAACTCCTAGCCTCAAGTGATCCATCCGCCTCAGCCTCTCAAAGTGCTATACTTCTTTTCAAGTACAGGTTAATAGTTTTGACTTCTACCTATTTAATAATGTGTCTACTATAGAGAAGGAAATTAGCATCCCGTATATTTTTTAATCATGGAATTTGACATATTGATTTATAATATATAATTATATTTTTATGATAATATGGTTATTGTAATATTGGTTTATAGCATTATTTGTTTTAAATTGATGCATAAAAATTATCCTTTCCTGAATAAGAGTTATTATAGTTAACAGTGTGTACTAATAATGTTACCCCTTAAATACAGACTTAGTCATTTTGTTTATGTATTAATTCCCATAGAAGATACTTTTTACACAAATAGCTCAAAGACAAATTGTAACTTCTTCTACTCAAACACTAATAAATTCTAAAAATGCAGTCAGAATTAATAAGAATCTTTATAATAACAGTCTTGAGCTTGCTTGCTGTTTTCCTTGTGAGAACTAATTCGGAATGTGTAAGAATTTTAAGAACAGGTGTTTGTTGTGAACACCTCCTTGGCAGATTGGTATATGGACCTTTATGAAAACAGTACCCAAGAGTATTTGTACTGTGAGACTCAACATGTTTGATCATTTAGAGTAAGGGTTTTATGAAAATCTGGCTCTTGTTTATTCTAACTCTAATGAATGTTATTTCTTCTTTCCCATAG
Seq C2 exon
ATTTCTGATGATGACTCATATGTCAGTGACATAAGTGATAATCTTTCCTTAGATAATCTCAGTAATGATTTAGATAATGAGAGACAGACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_145321:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.542
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGAGATGAAAACCGAGC
R:
CCAAGGTCTGTCTCTCATTATCT
Band lengths:
225-1720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)