MmuINT0113666 @ mm10
Intron Retention
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50327375-50328804:-
Coord C1 exon
chr6:50328670-50328804
Coord A exon
chr6:50327469-50328669
Coord C2 exon
chr6:50327375-50327468
Length
1201 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTATCTCTTCTTTCTCACAGATT
3' ss Score
10.78
Exon sequences
Seq C1 exon
GAAAACTCCAGGGATGAGGGCCGAGCCCTGGTGCACCAGCTCTCCAATGAGAGCAGGCTGTCTATCACCGACTCCCTTTCTGAGTTCTTCGATGCCCAGGAAGTTCTGCTGTCTCCTAGCTCTTCAGAAAACGAG
Seq A exon
GTAGGAGCACTGTGTTCAGTCATCTCCTTCATGAATTGGCTTGACAAACAGAGTAGTAAAGATTTGTCAACAAAAATGCTGGACTCCACGGCTCCTCCCACCATTACTTTGAAGGTCTGCTTGTAACACACCCCCAAACACAAAGTGATACGCTTGAAGAGAATGTGGAAAATGTGCCTTCCCTCTGTTTCTGTCACTTAGACTTTTTGCGATTTCCCATTCCTAGTTGTGTGTTCTACCTCCGCTTAAACCTGCTTATATTCTGTGCAGGTTTTTTAATCATTCTAATTTATGTTATACATTGTATACTGTTACTGTCTGATATGTTTGTTATACTACTTTAAACTTATAAACATTGTTTTAAATGGATGCATAAAATACCTTACTTTCTGGAATAGGCAAACCCCACAGTTATCCTCTATATTTAATGTAACCCATTAAATATAGAGGAATATAATATAATATAATATAATATATTTATATATGGTGTATGATTTATAAAAATTATGGTTTTGTTTATGTATTTATTCCCAAGGAAGAGTATGTTTTGACAATGAGTTCAAAGGTTAGCTGTCCACCCTTTTACTAAAATATTAGCATGCTATGGAAATAAGAATTTTTATGACGACAGCAATAGCGTTGGAATTTTCTGTTTGTTTTTCTTGTGAGAACCAAGAAGAATACAGAAGGATTTCCTTCCTCCCTCCTCTCTGCCCTCTTTCCTCCTGTCTTTCTTCCTTTCTTCCTGTGCTGGGTATTGAACTTGGGTCCCCTTCATCTCCTCCTTCCTAGGCAAGCACTTGACCTAAATCCTCAGCTTTAGCTTGCTTTCTTTCTTCTTCCTTTTTTCTTTCTTTTTTCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCTCCCCTTCTCTCCTCTCTCTCCTCCCCTCCCCTCCTCTCCTCTCCTCTCCTCTCCCCTCCCCTCTTTCTTTGAGCATTACCTAGGCAGATTGAGAGGGGTTCTATAAAAATAGAACCCCAAATTATTTCTGTGGATTTGTAATGTGAGGGAGGTGTGCTTGGCCATTTGGAGCAGGTTTTTTTTCAGAAAGGCTGCTCTCTTCTCTGCCCTGTCTTTCATGTGTGCTATCTCTTCTTTCTCACAG
Seq C2 exon
ATTTCTGATGATGATTCATACGTCAGTGACATAAGTGATAATCTGTCCTTAGACAACCTCAGTAATGATTTAGACAATGAAAGACAGACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822:ENSMUST00000071728:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.686
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACTCCAGGGATGAGGGC
R:
CCAAGGTCTGTCTTTCATTGTCT
Band lengths:
229-1430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types