GgaINT0098079 @ galGal4
Intron Retention
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15978824-15981564:-
Coord C1 exon
chr2:15981451-15981564
Coord A exon
chr2:15978905-15981450
Coord C2 exon
chr2:15978824-15978904
Length
2546 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACTTCTCGTTCTGTGCTTAGTTT
3' ss Score
8.57
Exon sequences
Seq C1 exon
CTAATAGATGATGTGTTGGATTTCACATCGTGTGCTGACCATCTTGGGAAACCGGCAGCAGCAGATCTCAAGCTTGGGTTAGCCACAGGCCCTGTCTTGTTTGCTTGTCGACAG
Seq A exon
GTAAGTTAAAGGGAACACATTGACCCCAAACCAAAAGCATACTGCCAGAGCGTACTGCCAGACCCTCTTCACAGCCAGAGACCCAGCTCACATGCAATCACTTCTACAGTGTAAGTGATGAACACAACCTGGGCATGTGTGAACAATCGGTGCATTAGTCTTTTGCTCCCCTACATGCCCAGAGTTTGCAAAGGTGCAGGTATTCAGGGAGATTTTCTGCACATTGGCTGCTTGCTCATGTTCTTTCCCCAGTCGCCATGTTCTCCCTTAGGCTGCCTATGTAACCTTTTTGCCAAGTTCTAGGCCTTGTATCCATTCTGGAGCACAGCTGAAAACATGAGAAGCTTTCCCTTCTTTACAGTTGTGCTGCTGGAGATAAATGTGAAAGTAGTTTGGATAAGTGGAAGGAGTACATCAGTAAGTTTAAAATTGGTCAAGATTTTTAGTGGCATGAGAATGATTTAGAGGAGTAAAAAGGAAGCAGAAGTACTAGCAGCACCAAAAGAAACATAAAAATTGGTAGTAATCCATAGAAGGGAAAAAGCCTGGTTTAATGCACCTTGCTCAGGCTTCTGCTTTACCTGAGGAAAGATTTGGGACTTAGAAAGCAGTCCTTCCTTCCAAGCTCCACGATATGCTAGGTGGCACAACCAGTTCCAGTCAGAGCTCTGGACTGTGTTCTCTCAGTGGAATTGCTCAGAGCTTGAGATGGGAAAAATTTTAAACAATTTATTTTAAAAATACAACCTTCTAACATTTACTGTCCCCTCTTTCTTAACAGAAAGAGCCCAGGGGGAGGCTGGAATGTATGCATGTGTTTGTTTCCTCATCCTTTGGGCATTTACAAGGACATGCATCTCAGGAACGACAGGAAAGGGAGGAGTATCAGCTGCTTGGGAGTGCAGCCTGATGCGTGCTGAGAACAACCCCCTCCATGTGCTCATTTCTTCCCCATGGACGTGTCATAGGGCACGCAGGCTTGTTGAATTACTGCAGAATTTGTTAGTCAGCAGCAGTTGGAGTTGTCTGGAGGGACAGTGAGAGACAGAAAGAGGGTGCAGTTGTGTCATGGGGTTTTTTTATCTACTTGTATGGAGACGCAAGGATGTAGTACAAAGACACTGACCAGGACTCGGAAGAGAAAGGGTGACTGACCATCTTTTGGGTGTTGAATATCACAGTGTTTCAATTAAAATTATTCTTTTAAGAATTTGCTTGGGTTTGCTGCTCGTCTCTTTCAGGCTCACTTATCATTGAATTACTTGTGATTTGATAAATAATATGGAAATACAGAACAACCTATCCGCTTCATTTTAAAGTCTTACTTGATTGTCATCGGTCACTTTTAAACACTTCTACTCATTTGTATCTGATAGATGAGCAGTGTAAGTTCTTGCACCGAAAGGTAACTTGGTCGTCTTGCAAAGATTTCCTCATGAAGCGGAAGGCTTTGCTGAACATTTCCTGCTGTTTTCAAGAAACTAGAAGAACAGCACTACAGACTTAAGTGATATATAAACAAAGTATAAGTGCTAAAAAGAAATCTGGAGCTAAATGCTTATCTGTGCCGCTACTGAAAGCTGTTTCATCTATTTTTATCTGAGAATAAAAAGTCCTGAGCGAGGACTTGAAGATAGTCCAAAATGAAATTGTTACTTATAGGCTGTCTCCTCTTGGAATGAGTATTACTGCTGTCCTGCACACCCTTTAATTTATCTGGCAGTCCTCACATTGTCTTGCCAACAACCGCACTTCTGCTTTGAATGTTGTCCGGCTCTCAATTGATGGCCTTCTCTTCTTGTCCTCCGTCCTCTGCTGAGATGCATTTCTTTGCACTACAGTGTTGAGTGACCTTAATACAAAAACATTCAAGCTCAACATAAGACCTGTCTGTTTTGTGTTTCAGGTCGGTTCATACCCTGAAAAAGTCATTTATTTTTTTTAAAGAAATACACTGCTGCACACTACTTCTTGAGTTACTCTTTGAGTGGTGCAGCTGAAGAAGGAGGGTTTATTTTCATTACAGCCAATCTTGTCAAATGCTCATAAACTACTCTTCATATCTGTGTCACTGCTAAAAATAGCTTTTCATTACAGGTTTGGGAATTTTTATATTCTTTGCAGCTTAGGTATAAAAAGCAAACGTGTGTGAATCCTCTATCACTGTAAATACAGATAATCTGAACGTTGCAATTAACTTGTCATTTCATGGGAAGAAAGCTGGAATGTAGGGAAAGCCGGCTGTGAGTCACCAATGAACCTTTAAATGCATCCTTCACAATGAGTGCCTCTGAGTAACAGAGAGGTGTCACAACAGTGAGGGATATCACGCTTGTTCCCTAACAAGGAGTGCATAGATCTGTGGTTTCATAACCACGGTTGTGCAAGGAAAGCAGGTAACTGTGTGAGTGTGCTGCAGTATATCTGTAGGGATTACAGTAGTAGGGAATGGCAGCTGTACTTCATTTCTTTTCCACCTTATCACAGCCAGCTGCTGCATGGAGAACTACTCACAAGCAGTACAAAACTTCTCGTTCTGTGCTTAG
Seq C2 exon
TTTCCAGAAATGAATGCCATGATAATGAGACGATTCAGTAAGCCAGGAGATGTTGAACGTGCTCGGAAGTACGTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559:ENSGALT00000012224:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(14.1=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]