RnoINT0109417 @ rn6
Intron Retention
Gene
ENSRNOG00000048849 | Pdss1
Description
decaprenyl diphosphate synthase subunit 1 [Source:RGD Symbol;Acc:2319976]
Coordinates
chr17:90037892-90044200:-
Coord C1 exon
chr17:90044087-90044200
Coord A exon
chr17:90037973-90044086
Coord C2 exon
chr17:90037892-90037972
Length
6114 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTCTCTTCTTTATGGTTAGTTC
3' ss Score
6.81
Exon sequences
Seq C1 exon
CTCATAGATGATGTATTGGATTTCACCTCATGTTCTGACCAGATGGGCAAGCCAACATCTGCAGACCTGAAGCTAGGCATAGCCACCGGCCCTGTCTTGTTTGCTTGCCAGCAG
Seq A exon
GTAGGTCTTACTCCATTTGAAACATTTCTGAGGAGGCCTATGAGATAACCAGTATCTCAGGCACATCAGGTAAAGTGTGAGATAAAAACCTAGAGGCATTTAGATAAGGGACCATAGATGTGATCCTGGTTTGAGAACTGAAATGTTAGGGTGGTAATTTCACTTCTAAAAACCTTATCTCAGTTGTTATAAGGGCTAGTTGATATGCTAATTATCTTGTAAATCAGAAAGTGCTGAGTGAATTTCACATATGTTGGGTGTTGCAAGATTGACAATTATTACTTTTATGATTGGGTATGCCTCAACGCCTCTTGAAAGTACAGGAAGTTCCAAGGGTATCTAAGTCTGAGGAAGTCATAAGTTCTAGTTTAATGGAACTGTTGACACCCTGAGAGAAGCCTTGATGCCTCAGCCATTGCTTCCACATGTGAAGTCAATTGAATGCTTTAGAACCACATAGTTCCTTTTCCATATTGAAAGACTGTCAAGTAGTACTTTTCATGTCCTCCTTAACATAAATGAGATGCTAAAGATACTGCATCTCATTTGTCTGTCGAAGCAGCCATTTCACAGCATCATCTGGACCCCGGGCCATATGCTTTTGGCCTTGCCAGACGATGCTTGAAAGACTGGGCCATTAGCTGTGTATGGGTGTCTTTAAAACAAATAGCCAACTGAGTGGCAGTGAAGTGGTGAGTTAGCAGTACAATAAAAGGTAGTCATCACCAACTACCTTTTAGGTCTAAAATTTTTAAACTATCAGTCTTTTCATAAATTTTGCTTGCATTCTTTAAAATGTAAATCATAACTTCTCTAGAACATAGAAATTCCATTTTGATATTAAAACCAATGACTTTCCGTTTGATTCATTTTAAATCAAGAAAGGGAAGAAATGATCTTTCATCCTCTGACCTAGTAGAACTACTACAGGTAATTCAGCCTCAGGGAGACTAAAGCCTGGGTGGATGGACTGGGTACCATGGACAGTACCTGTCAATGAAAAGAACAGAGATGTTGGGGCAGTTGGTAGAAACTGTTATCCTTGTTACCAGGCTCTATCATCGCAGACATTTAAGGTCAGAGTAAGAAGAGAAAGATGTACAGCTCAGTAGTGACACAGGCTTGCAACCCAACACCCAATGCAGGAGGATCATGAAATTGCAGACAGTCAAGCTGCATTAAAAGCAAAACAACAAAAAAAGTCTCAAAAATCAAAAACAAAATACAAGCATTCTATGATGGTAGGTCCCTTCTCCCATGAGACGAAGACCTATCAACTCACTACCCCAATATTCAGGAATATTATTAATATATATGCCAAGTTTAGAAAAATGTAAGAAAACCTTTTGTATATTAAACCTTTACTAAGGAACATTTCCTGTTATGCCATAGCCACCTACACACACACACACACACACACACACACACACACACACACACAATTCCTGAGCCACGTGTGTATAAATGAAGTATATCTGATTATAGAAAAATTAGTCATTGGCTAGCATTTATTGTACAATTGCAGACCGTCACCATCTCTGTCACAGGTGAGTATACATGAATAAAGGAGAGCATGGTTCATGCCCCAAACCAGCTAGCTCAGCAAAGATCAGTTAGATGGGCTCTAAGCTTTTCCCTGATTCAATCTATAAAGAATCTGGGTTTGCTTTTAGAAGTCTCAACAATTTTAAATACTTGTCATGAACTCCATAAAACAAATTAAATAGACTGGCTTTTTTGGATTGTTTTATTACATTATTTATAAAGAAAGCAATTTAACTTTCCTGTACACAAAGAATAGCTAATTTTCATTCAAATATAATGGGACAAAGTGAGAACAGAAACTGAATGCATAGCTCTTATGATTAGCATGCCATCATAAGATGGGATACTGCTAAGATGTTTAATTTGTTTATCTGAAGGTTACCCAAACTATGGTTTTATGTGTGCTTTACTGGGAAATCCCAGAGTCATGAGGCACCCAATTATTCTGACCAGGCCACTCCTTCCCCTTCTGCCTGTAAGGCAGTGGGAAAAGGAGCTGCAGGCATAGCACAGCCTCAGAAAGGAGACACAAGATGAAACTGGGCAGGAGTGCCTCTGATCAGGACTCACCATGCCAAAAGTTAATAAAATGCATATTTATACTTAGTCAAGGTTGTACTTATAAACTGTTCTCAAAACCCTGAGCTTAGAATCTTTTTATGCATTATTCTGCTAAAAAGAGGTTCTCAGCAAGAAATCTGTCAAAAGTTCATGTGGCTTAAAATAACTTTGGGTGAATCAAGTTCAAAAATAATGCAGGATTATTCAGTATTTAGCTTTAATAAAACAGTGTTGATTTTAGTTTATAAAGGATTCTTTCTTACGTTGCCCCTGATCTCACAATTCCACTCTGTGGTAGATAACTGTTTGTTCTTTGAATGAAATTGATGCTCATGTCTGGCCAAAATGGAACATCTGGTAGATGGCACAAAAGGCAATTGAACATCTTTCCCAAGTCTTCTAAGACCAGCATTCATTTTACTATGCTTGAACTGCTCCTTCAACCAACTGTAGCCAGGAGGTCTCCCCACAGACCAGGTAGCTGGAGATACACCACACAGTATCCACTACTACTAGTGGATAACATACCATTTAGAGTACTAGTGAGGTTTTTGTAAACCTTTCCTAGGGGATGTCTTGTCCACAGCTTTGTCATTGAACTAATCCATCTGAACAACACTGATGGTCTTGCTCTGAGATCCTAGGCCTTTTACAAACAGTCTTGCTGTCTCAATCTCTCAAGTACAAAGATAATAGCTATGTTCACCAAACCCTAGCTTACCTTTTCCTTTTTAATGCTGCATGGTCAGTGATCTTGACATTATAATTTGCTGGGCTAAGAACTTTTTGACTGGTTCTCCTATTTTTGATATCTTTGTGAAAGATTCCTTGATAGCCATGTTCAGGGATTTGAGGTGTCTATCAGGAGGCCATGGTGCAGCAGGAGAGATTTGCCTAACATGTATACGACCCTGGGTTTGACTCAGAATGAACACATGCATCACACACATACACATGCAAGCACGTTCACTTTATGATTTCTGAAGAGATCTCAGTGGTGATAGTTAGTATACTCTTGTGTAAGTATGTATATTCTCTTCAAGAGCAAACACTTGAGCTCTTTTTGTAATTGCTTAGCTTGCACAAGTCCCTGGACTCCATCACTAGCACTTGGGAAGTAAAGGCTAGGAATTCAAAGTTATTGTCAGCTCCACAGTGAGTTGAAGGTCTTTCTAGGCTATATGAGATTGGTGCCCCCCCCCCAAAAAAAAAGGAAAGAAAAAAAAATACAGTCTACAACATTGTCAAAGACCTTATTCACAAGTCCAAACCAGAGCCAGAGGTAGCAGTCTGTAAAGAAATTGTACACAGAATCTACTGGACAAGAAATGGGAAATAGTTTATCCTAAACAAGCAAGTCTTCACCCTTTTTCTTTAAAATTCCTTGCACATTAACTCAGTAACATTTACCTGAATCTGTTATACTGTCTCAGGCTTTATAATTTTTCTCAAAATATAAACTTTTGCAAAAGTTTGAATGCACATTTCCCTGAAGTGTGGTTATAATGTCTGATGGTTATTCTTGCTGTGTGTGATGCTCAAAAAGGTAAAGATTAATTAGAAATGTCTGTCCTCTTTTTCCTTGTTTAGACTTGCTGATTACCTTCTCTAAAGCTGCTATTTAAATATGTAAATGTGAGAAAGTAATTAAGACATAGTGATATCCTTCAGTTTGGAAAACAATGTGAGAAAATTGTTTGGCTTTCTATTATGTATTTTTTTAAATATTCATATTAAATCTCCCAATGACATATGAAAATGTTTGTGAAATACTCAGAAATAAAATATAAGTGTTTTCCTTTTTTGTTGAGATCAAATTAACTTAAAAGCTCCTTTTAAAAACTTTTCTTTCATCTGCTTGTTATTGATAAATCACTAGACCTAAATGCCAGGCTGTCAGCGTACTTCCCACTGTCATCACCAGCCTGTGCACCAGATGCCCAGGCTTACACTATTGTGACTATTTGGTGCCCTAGAATTAACTACCCAGGTTTGGGGACCGTCCCATCCCAGTGCACTAATCCCCCTCAAGTTTTGTGAACACACTTCAGAGTAGAAGTCCAACTCCCTCACAGACTATTTTCCTACTTGTAAAACAGCATGAACAAGCACCAAAAAAAAGTCTTCTCACTGAAGCTGGGGTGAGAATCATCTAGTTTCCCACTTCTTCCTCATGGGTGGGGGATGAGCTTTTAGAAGTTTAATATTTGCATATTAAAATTTACATGGTGTTACTTCAAAGGAGGAAATGTAGTTATGCTCACTGCAACTTAGTTTTCCTTAAAATGATTCTTGTTTAGTGTTTTTACAGTAAAAGCATCAGAGAAACTACATAGTTGGCATATTTCATCTATCATGTAAATCATGCTGGGAAAGAAAAGCTTATATATCATACACAGCAAATTTCTTACGAGATGCCCAAGACACCATCACATCTGCTTTAAGATACAGCCTAGAAATAAGCAGGTGGGGGAATTAAAAACTTAAAGAAACCACCAAAATTATCTGATTGATTTCTTGATTTTATTCATAAAAGACCAGTAACTAATGCAAACTAGTACTTAAGAACTAACCAGTTGTTGGTTCATTAACTTCTGTATGGATGTTAGCTGTCTCTACAACTTTGTTCTCAAACATGTACTTTTCTAAAACACTGCTCCTCGTTTGGTTAGGGCTTCTCTTCTCTGTTTTTTTTGTTTGTTTGTTTCTCTATTTCTTTCTGCTGCAGATTCCACAGTCACTATTACAGGAGAACTTATCTCATCCTTTAGGCGTAGTGCCAGGGAAACTGGCAACTGTGTAAGCATGGCTATCTGACAGAACACATCCTACCCCTTACGCCATGGAACTGCAGACTGCTAAAAATTGCAAAGTTGAAACAGAAAAGAAGGCTGAGATGAAATTTGTTCAGCTGGGATGGTCTCTAGCAGAACCTGGACACAGGGTGTGGGTCTGGAAGTGATGTGATCTTGGTTTGGTCCTAGTGATGCCATCTTCCTAAACAACCACTAAGAAATGAAGAGGATAAAAGGCATTTTCATTACGACCAAGAAATTTATATTTTGTTTGTGTGCATGTGCACACTGGGAGACAGGTGGCTGAGTGAGTCAGTTCTCTCCTCCTGTCGTAGGTTCTGAGATCAAACTCCAGTCATCAGACCATGCAGCCAGCCTAGCTGTTTTATTTCTTTTGCTATTGGGCCTTTTTATTTCCTCTCCCTTATTTGTGCTACTATGAATTAGTTCTAGGACCAGCCATGAACCTAGAAAAGCAAAAGGGAGAATTTTCCTCCCTTACAAAGTCTTCAAGCCCATGAATTTTTGTTTGTGTTAGGGATGGAACAGCACTCTAACCATGCTGGGCAAATGGTCTAATGCTGAGCTGTGTCTCATCTTTCTATAACTTAGTACACTTATCTGGTGACATCGCTGTCTCCTTCAATCCAAAGGAGGTGTTCATTTGATGATCCTAACACCAGTACAATCAGATTTGTTGGGAGTAGGATCAAGGCACTTAACGCCCCTTCCCCCACCTCATGCCACATACACATGTAGATGATTTCTGTGTACACTCAACACTGTCTAATTCCTAACCCCTTCCTAGACCACCAATACCAACATCACTTGGCAATTTATTAAAAGTGCATTTTTAAACCACAGCCTACTGAATTAGAACCTGAGAGGCTCAGAGTACTGCAGTACTTTATCCTCCTGAAGCTTACTTAATACTGGACTGCAAATAGAACAATTAGGTCTGTTTTGTTTAATATGTATGTGCCTGCTTGTCTGTTGTGTTCTGCATGTGTGCAGTGCCCTTGGAGGTCAGAGAGGAAATTACAGGAGACTGATCTGCCTGGATGCTGAGAAACCAATACATATTCTCTGCAAGAGTACAAGTGTTCTTAACTATTGAGCCATCACTCCACCCCCCCCCTTTTTGTTTTTCTTATTTTCTATAGTTACGAACAAGTATTAAAACAATAAAAAGATTTCTCTTCTTTATGGTTAG
Seq C2 exon
TTCCCAGAAATGAATGCTATGATAATGAGACGGTTCAGTTTGCCAGGAGATGTGGACAGAGCACGGCAATATGTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048849:ENSRNOT00000071978:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(14.1=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]