GgaINT0099015 @ galGal3
Intron Retention
Gene
ENSGALG00000011164 | CHN2
Description
NA
Coordinates
chr2:33704997-33711745:+
Coord C1 exon
chr2:33704997-33705074
Coord A exon
chr2:33705075-33711660
Coord C2 exon
chr2:33711661-33711745
Length
6586 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTCCCTCCTTTATGTTGCAGGTC
3' ss Score
12.28
Exon sequences
Seq C1 exon
ATCACCTCCTTGGTCCGAAGAGCAGCCTTAACTCAAAACGACAACCATTTCAACTATGAAAAAGCACACAATTTTAAG
Seq A exon
GTAAGCACGACTTCCTATTATTCACAGCTGAAAAGTTATGTTTTGATACCTCTTGATTTAGGGCTTATTTTTTTTCTGTGGATTTTCAGGCAACCATCTGTACAAGCTCTGAGGAAACTGTTGAAAAATATGCTTTTTTTCTCTCTAAAGTTCTGCTGACTGCATTCCTAATGTGCTTTCACATAGCTACTTAATCCAAGTAATGGTTTTGCTGCTTGCTTGACTACTTGATTGGTATATTAGTTCTTTTTATTGTTCAGACAGAAAGGATGCCTCATATTGATTGTCATTACCTTATCTAAATGGCAAAAATGCAGCTGCTACCAGAAGCCACCAGCACTTTATCAGCAACATTCTGTACCCCTTCTGCTTTGAAGAAGTTGAGAGTGCTCTGGTGCTCACCCATACAGCAGAGTGCTGAGGGGTTTTGTCTCCCACCTTTTGTTCCAGCACCATATGCTAAGGACATGCTCTTACTCTAGAGTCCCACTGAGCCATGGGACCTGAGCTTGTGCTTGCTTGCCACACGAAAGCATGTGGCTGGACAAAGCTGGGGATGTTCAGGCATAGCATCTTACTGCTGTCTGATGCAGACAAAATCAGATTTTTCGCTTTTTCCCAAGAGGAGCAGGGAAGTGACTCAGCTTTGGAAATGGACTTCCAGGCAGCTTAAGCTGTTTTGCCAGAGGACAGTGCTCTTCCAGAGCGTGCCAGCCAGTTACTGTATCTAATATCGTCAGACTGTGGTTTGATGGTTATCAGAATGGATACAGAGGGACTGAGAGGCGGTAACACCGCAAGAGAGGACTGCATCTCAGCTTTGAAACCTCAGTTTGCTTCATGTTCCTTGAGGATGCTGATGTGGGTCACTGTCAGAGCATTTCAACTCATTAGCAGGAAGAAAATGTACTGATATTCATCTCTGGCCTGTCAAAAAAGGAGAAGCACTAATGAAAATGATTTCACTGATTTTGTGGTTTAGCAAAAAAGCTCTACTTCTTGTTCTTCTGTGTGCTCTTCCATGCAGATATTGCTCTCCTCTGCAGTGCTTCTGCTGCAGTTAGTAAATCAATAATTTAATATTAGTGAGCAACACAAATAATAGCTTCCCTCTTCTCATTCCTCCTCCTCAACCCAGTCTACAGAAAAGTCAATACTTATTTCACTGATTCACACAGTAGGAAATAGCGGAAATACTCTGTGTTGCCTTGCTTGATTAAAACATCTTTCATTCTTTCTGGGTTTTGCCCTCATTATCATTTTAATATCAAAACTATTTTAGTTTAACAAGAAAATATTTTCTCATGGATGAGAGTTTTTTCCACTTTGACCCATGCATTCTTTCCTCTTCAAAATTCCCCTTGTTTTGGCTTTGATTTATAACTGGAAGTGTGCCCAGTTAACTTTGTGTTTGCACAATCTAGCTGTTGTACAGCCTCTATTCCTTTCTGTTTCAGAAGAGTCATAGTTTTAACTGGAAAATCACATGATTAAAGATGTATGCATTTAAAAGCTTGACAACAGAAAAACTGTTGGTTTCTCCCAGTAAAAGGACACAAAAATCTCAGGAAAGGAACATTAAAAAACATACGTTGTCAAGAAAGAAAGGGCAGTCAGAATTGTTATATTTACTTAAGGAACAAATGTATTCACTATGCAAATAAAGTTAGTTTTCCAAAAGAATGTCTTAAAACATGTCTAGTTGCTGAGCAAAAAATGTAGAAAGAATGCTTAGAGTAGAATATTTGGATTTAAAGGACAGATAAGTTCAAGTCTGTCTTTAGCATAAACTCATATTAATTGGAAAAAAATATTAAGAAATTATATAAAAGAGAAAGAATGGCTTTATGGGACTTGGAGCAAAATTCTTGATGGCATTCTGGGAAATATGCAATTTTTCTGAAGGAGAATGCTATTTTGCAGACATTCAGAGTCATTTTCTGAGTTTTTAGGTGAATACTGCCATGTATTGCATAATTCACTTCAGTTATAGAGACAAAGCTTACATATCACAGCGTTCAACTGAACCTTGTCATGGGCTGCTCTTCATGGACAAACAGAAACTCTGTAGCTCTTTTTCTTTGGTCTTGAAGAATCTTGAGTAAGTCCAAAATTCAAGTTAAACTGATGGATCTTATATCTACCAGGATCTCCCTCCAGCCTTTACAACCAGTACAGAAATTTAAAAGGACCGCAGGAGTTTGGGCAGTGAGGGCACTGGGTTATCCCATTCTGAGCGTCTCTGCTTTCTAATTCAGACTCTTTTCCAAATTTCAAAGCACTCGGGGCAAATGAACAGAAAAAATAGATGTAGAATTCAGCCTGATTTGTTAACCTAGGTTTGTCCTATGTGCAAAACACGATCACATGGATTTAGATTTGGAGCTGGCGTCTGTCTGGCGGGACAACTTTGCATAAGCCGGGGTAGACATACCATAACTCAGGAAGAAGAATAAATCTCTGAAGCCCTGTTTATAAAAACACAGAGGTATTTCTGTAACTGTGTGGGTTTCAGCCTAACTTTGTTGCAGAGTAGCCTTGTATCTCAACATTATTTGGATCTAGCAGACTTTGGCATGTTTTTACCCACCAGTGTCAGTGACAAGGTCAGGCTTGTGCCTGAGGGCAGTTGTCTGGAGTTTGGGGATGCTCAGTATAGAATCACTGAATCATAGAACTGTTAAGATTGGAAAAGACCTCTGAAACCATCAATCCAACCATCAGCCCATCCTGACCATGCCCACTGAGCCATGTCTCTCCTAGGAATTCATGACAGGGGCTCTGTGATGTTTTAAGGGAGCAAATATAGCTGAATAATGTGTTTTTACTGCAATATTGCTCCTGTTTGCCATGATAGCACGGGCAAACCTCACAGCAGGATTTGCTACTAGAGCAAAGGCAGTTGATTACTTGCAAGTCAGGAACTCTGCTGGGAGATAGGAAGCTCTGGGTTAAATTCCCCCCTTGTGTTAATCACTGCAGACAAACACTGCTTCTGGGAAACAAAAGGGAGATATTTTTTAGAGGCATCACAAATATTATACATGTGTATCTGAACAAAAATTGCAGCAAAGTCAGCTTGTCTTCCCTGCAAACAGCTCCAGCTCAGCAGGAGTACAAAGTAGAGTACAAATTCACATGTGCTCAGGTGAGAGTCTGAAAGAAAACTATTTTCTTTGCCTGCAAATAGAAAAGTCTTAAACACAGTCACATAAACAACAAAATCATCTCAGGAGCAGCAGCATCTAATTCTCATTAAAACCATGCATTTCAATCCAGGACAATTTTTAGTTTCTTTGTATGATATTGCTAAGGGAGTTATTTTTTCTTGCCACTGCACTGGAATTCCTTCACCTTGGTCTTAATTTCTCCCTCTGTGAACACAGTTCATGTAAAACCTCAGGCACAGACTAAAACTTAGTGAGACAGACAGTGCCTGTGGGGAAGCTCTTCCATTTGGAAACAAGGACACCAGAGAACTGAAGGGCAAAAGCAGGAGAGGAGGAAGGCAGTAGGAAAAGGCATGTAGGAGAATTTTGGGTAGCAACCCAAAGGTGGCTGGAAGAGAAGAGAAGGTGAATATAAGAAATAACGCTTTGTTGAAAGTCGTAGAGATGGACAGGAAACAGAATGAATAAATGAGACTTTTGAGAAAAGAAGATGAGGGATTGAACAGGAAAAGTACAGTTTTGTCTTCTATGAAGAAATAATTGTTGTAAATTGACTTCTTCATAGATGGTAGTAAAATCAGCCCAAGCCTATGCAGTGTGTATTCAGAAAAGCCACCCAGTACTGCAGAATGGAGTGGCAACATTAATTAGGTCTTCGCCATTTTCTCAAAAATCTAAGTCCAGTCCATTTGTAGGGATACGGTTGCAAAGAATAGGGCAAAAACTAAAGACCCATCTCAAAAACTTGAAGACACTTCACACAGAGGATGGTGATGCACTGGAACAGGTTGCACAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGTGACCCTGCACATAGCAAGCGGGTTGAAACTAGATGATCATTGTGGTCCTTTTCAACCCAGGCCGTTCTAAGACCTTCCATTATCTTTTCCTTGCAGGCCAAATTCCCACTTGCCACTTGAAGGTGCTAGATGCAAGCTTTGGGCTGAGTTCAAGTGATGAGTTCGCAAGGACAGGATTCCTTATTTCTTTAAAATTAGTGGCAAGACTCAAATAAGACACTTGGTTCTAATCTGCATCTTAGGAGATTTTTTGTATTTTCATCCAGAAACTTCTAAAAGTCTTCCTTTTTCAGTTGGAATAGGGAGTATTTTGCTGTTTCAGCCTGACCAGAAATCAGCAAGACTAGCTTTTCTCAGGGTATTTCAGCTGGGATCTTGCCATTTGAACTAAAATGCAGAGCCATGAAAAATTGAAGTGAATGCATAAATAGAGCTAGGCCTTTGAGGGCCACCAAGCCGAAGAAAACAAGGGCAGGGTGTGTGGTCAGCACTTCTCAGCTGGAGCCCTCCATGAGCTCTGAGGACTGCTTGCTGATAATGACAGCAGAAATCAAGGAATAATCAGCTCCCATTTTAATATGCCACGGCAAGATCAGCTGAAATAAGCTTTATGTAAAGTGAGCAAGTAGGCCGCAAATATCCTAGCAACTGAGAAGTGCTTCACGCGGAATGGAAGTGGTGCAGTTTTAGAAATACCAAGTGAGCTTTTCCAGCCCCTTCTCACAAGGTTAGCTTTTGTAAGCCATTGCGCAGTAGAAGATGAGGATAGCTGTCTTCCCTTAGCAGATGACTTCCACCGGCAATTAAATGCAGGTGCAGACCTACCAATTGCAGGGCTATCAGTCTAAAAACACAGTCTGTTGTTAGATGCTGCCACTAAAAGCCCTGCCTGAAATTTCATGCTACTTCCCATTCAAAACAGAAATAAATAAATGAGTGTATGATGTGTATATACGAGATATTTCAAACTTTATAGCAAGGTGCTGTTTCCCAGAGATGCACATTTTTTACTGAGAGGCAAAACAGTGTTTTAGACAATTTGACCCATCACATTTTCCAGCTGAGACTCTTTATGATCAAAAGGGAAGAAGAATTACTGTTGCTGTAAGCTCATCCACGTAATTATTGGATGTGCGTAATTGGTCTGGAGTAATTTGTGGTCAGGCTCTTTAAAGTAATAATACCACATTTTATCACTATGTCAGGAAGAGGGCTCTGTACTAAATTCACAGTATTTTCATGCTTGGGAGTACAGAGCTGTTTATCCACGATCCTGCAGACAACTGTGGCTAAAACATTAGCAATCCAAACGCTTGCCTTCAGACTTCACAAAGTTTACTTCAAGAAGGGCAACAGCCAATTTTTATTCTATGAAAAGAGCAACTTTCCCTTCCCATGGGCGGAAGCGCCTGTCAGCAATCCGCCCCATCAGTAAACACAAACACGTCTGAAGGAAAAGGAAGCATTAGCAGCCTGAGTGTGCATGATTTATGTTCTTCAATTAAGCCTCTGACCAGAACCGGCTCATACCACGTCCATTCACACAGACACAGACCTCACTATTTACTCTTCTTTTCAATGAAAGTGAAATGCTTACTTTACCAGAACATACATCTTAAACAAAACGCTTTTCCATACCAGCCTTTGCAAATGCTGCTTTGAGGAAGCAGCAATTGTGTGCAAAAACACTGATCTCTCAGCACCCAGGTTCCATTATTTCTCCTTATTTACTGATGTTTGTACTGCGGTAGAACATTTTCTGTACCAGGAAGGACCCCTGTGATATATTTTGCCTGCGTGAGTCCAGTTTACATACTGCAATGGGGAAAGATATAGTTTGCTTGTATCACTGATGGACTCCAGTGTGACAAATCAGATCTTTACCCAAGCACTGCCTGGAATGAGTGCACAAATCATTCCTTGTCATCCCCAATACAGTCACCCTGAGTTTTGGTCAGTGTTGTTGCGTGTAAATGCACAGGTAGCAGCATCATCAGAGACATGTGTGGTGCTCTCCTCATTCTGGCTTTGCACCTGATCTGTGGGTACGTGGCTTTGTGGGAAATCCAAATGGGTTGCTTTTGTGCCTCTTCTGTCACTTCACTGTTTCAAATGATCTGCTGAAGTATGTTTGAATCTCAGAAACATGCTTCGTTGGTTTGACCTCATCAAATAAAAGCACTGACTACAGTGCCTTGGATTATTAGTTTTACTTCTTTCTCCTCTGACTAACAAACCTGGTTTCCTCCTCTCTACTAGAACTAAAACGTCAGCTAACAAATATTGTTTGTTTTTAGTGTTACACACAGCCCGATTCTCTGTTACGTTAAGCCTATTGAAAGATAAACTTTGAGATCAAAGCAAATTTCTTTGCCTGTGGTTTATTTCATCTAGACTATGGAAAGATGTGGGCACTGTGTGGTAACGATTTGCTCCTACTGAGTCTTCTGTTGTTTATCCAGTTTAGTTGTTCCATCTGTCAGACCATCTGCCTCCCAGTGACCCCATTTCTTTTTTTTCTCCCTCCTTTATGTTGCAG
Seq C2 exon
GTCCACACGTTTCGAGGTCCACACTGGTGTGAATACTGTGCCAACTTCATGTGGGGTCTCATCGCTCAGGGAGTGAGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011164:ENSGALT00000018199:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(5.7=11.5)
A:
NA
C2:
PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(48.7=65.5),PF138311=PHD_2=PU(24.1=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]