GgaINT0099333 @ galGal3
Intron Retention
Gene
ENSGALG00000013568 | E1BYS2_CHICK
Description
NA
Coordinates
chr2:91698994-91704503:-
Coord C1 exon
chr2:91704331-91704503
Coord A exon
chr2:91699194-91704330
Coord C2 exon
chr2:91698994-91699193
Length
5137 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGT
5' ss Score
6.61
3' ss Seq
TTCTGTGGTTTTTCTTTCAGTAC
3' ss Score
9.64
Exon sequences
Seq C1 exon
TTGTCCGCACGGACAGCCTGAAAGGGAGAAGAGGTCGGCTGCCTTCCAAACCAAAGAGCCCCCTGCAGCAGGAACCTTCGCAGCCCTCCCCGCCTTCTCCTCCCATCAGCATGATGAACGCCCTCGTACGAGCTTTAACCGACTCCACGCCCAGGGAGCTCGACTATTCACGA
Seq A exon
GTATGTCTCGCTTTTCTTTGTTTGTTTTCTGCAGGGAAATGAGTCATGAGCTGCATTCCTAGCTGGTTGGCTGAAATGAAAAGAAATGTGAAATTGGGCTGACAGTAGAAGTTTGTCCAGCCGGCCGTGCCTTTTGGGTGGGTGGGTAATGGTGGGGAAGGAGGTGTGCCAGCGCTCAGTTGGCAGCTGTTCATTGTGAGGGTCTTATATTCAAGGTTATCTGCTGTGTATATTTGAGAGGGTGAAAGCAAATTGTGTGGATCAGTAGAGCAGTCTTCTTGCAAAAAGCTGTGATTACAATACAACTGATTAATCTGCCAAACTCAGGAGTATCCATATGTCTGGTATCTTAATTTTCAAGTTCTTCATGCTAAAATCTAACAGAACTTCGATAGTGTGCAGCTATGAGTGTTGTGTAAAATAACATGCAATGGATAGGTCCGTCTACATTGAGATCGTAGGAAATTTGCCATTATTTAAATGATTACAGAGCCCCGCTTCAGGTACCCCAGCAGGAGTATTTCTTAGGTAAAATTCACATTTGGGAAACAATCCTCTAAATCAAAATTCTTAAAGTTTGTTTCAGCAAAGCTTCACCAGCTGTTGTATATTTCCTTACCCTAGCTCTTTAATGTGTAGTGTACACCATTTAAATATTGATAGGATATATTTTGAAAGCTTATAAAACTGCTCTGTAGTTATTAAAATATAGTGTAGAAGTAGCTTGTAAAATGCATTCTTGGGAAGGCTGAATATATGAAAAGAAAAAAAATATAGCTACAGAAAAACAAGATTGAAATTCCTTCCACTTACTGAAATATGATTAAATCTCAGACTGTGAAAAATACAGCTGTACTCAGACAATATTCATATTGTCCATTTATCACTTGTTGCTAAGTAATATTTAAAGCTAAAGCATGTTTTGTTGTAATTATATAAAAATGTATTCTTCTAGCTTAGAATATGCTTACATATGTAATTTATAATTACTTTTTAGTATATATATTACATATGTCATTTAGCAGTTATAGGTATGCTGTAAGTTCTTTTCTTCAAGCTACTCAGTATGTATCCAATCTGACAGTTTTACAAATGGTTTTTATGAATGAGCTGTTTAGAGTCTGACAGCCTTTGGGGGAGAATGCATTGCCCATATTTACATGTATTTTAGCTTACCCAGAGAGTCTCGGGGTCGTTCTGCAAACACCAAGGTCCACGTCCAGCTGAGCTCTTGGACAGGAATCTGCTGGGTTCCTTAGCGTTACATGAGCATGACAGCTCAGTCCATGAGAGCATTATCCAATCTCACGTATTTACCTATAGAAGCAACATTATTTTGCACTCTAAATAATAGCAATTAAATGAAAACTCTGACCTTTTTAATGTGACTTTCTTCTTCATCCTGCGGCAGCTATTCCTGTTCAAATGGAAACAGTCCGTAGGTCTCACTGCTGAACAATCCAGTTGGTCGTTACAGAAAGCATGGGATTGACAGCAGATTAATTTAGTTTCGATAGCTAAAAGATTATGTATGGTTGTCTGTTAGGACACGCTAATACCTACGTTTTTCTTAACATTAAATCATACACTAATCTGTTATGCTCGGCAGTACTGAAAATACAAAAAATAAGCTAAATGAAAGCAATAGATTCACATGCTTTCCATGAACCTTATACTTCTTTAAAAAGTTAAGGGAAATCAGATAGGACTGCTGAGTAGACACTGAGATTAACTAACAGAAACATGCAGGAATCCCACTGTAAAGCTCAAAACTAATGTGAAGGACCCTGTACCTGTAAGGACGGGCTTGCGGCACGCTCTGCTCGGCCGTGACCCTGCCGTGCACCACAAATGGGTGGATCTGGAAGCCTGGCTTGGAGTCAGTCCTAACGCTTCCATAGTCACGACCTTAATGTTTAGCATGGTCTTCATGTTTGCAAGATGTTTGCAACGTCTTGACTGTTGCAAAAATACAGATAAGAGTTTCAGAGAGGAACGTGCGCCTCTTCCCTCCAAACAAATGCAACCATCTACACCAAAAAACAAAATTAAATTGCATAATCCGTGAATTTTAAAACAAAACACAGTGGAACCAGTTCTGTTGAGAACATGGCTACTTCTCATTTCAGCACTGGTTTTAACTTACCAGCCCACAGCAATGGTATATTTAGGTACTTGGTTTCAAAAAGCAATTGCTAGGAAGAGAATTTGGTTTCTGAACTTTTTAAAGGCCAAGGGCCGTGGTCAGGTCTCACACCTGTTTCACTGGTACAATTCCACGGGTTTAGACTTCTCAGTAAGTGAGATGAGAAGCAGACCCTGTATCTTGCTGCCCTTCTTCAGGCAAAGCAGCCACTGACTTAAATGGAGGTGTTTATTTTTTGGAGGGGCATTCAGCCAATAATCCCGCTCCAATCCCCAACTAAAAAATGTAGCAAATGTCGGTGCTTCTGACACAGGAAGGGTAGATGCACGGAGAAACAAGCCTAGCTTCTAGCTATCGTATTGTAAATATGCAACACCACCGTTGTTAGACTTTTGTAGCTCCAGCAGTCCATGGAGGTCTGATAAAAGTAGGCAAAGGGTCGGGCTGGATCATGCTATCAAGCTATCAGCCTTTTAGATATACCTTATAAATCAGCGTCGCTTGCAAGGCACACATCTCCCCCTTGAGCCAGTCGGTGTTGTTTAATTCCTAGCAGGGCAGCAAGCACTGCATAGGGCAGAGCTATCCCTTTTGGGGATATCCCTATGGCAGGGGGGTTGGAAGTGGATAATCTTTGAGGTCCTTTCCAACCAAACCCATTCTATGATTCTCCTCAATGAAATAATCACGAGGGGAAAAAGAAGAAAAAAGTTTTTTGTGCATAAAACTGAAGCATACATTTTTTTTATGCCTTCTTATATACTCATTAAGACCGGTGGAAGTAAATAATATTGTATTTCAGCTCTTCTCTGTAAGTGCTAACTCTGTGTAGCAAGCAGTGACATGTTATAGCAGTTCAAAACTGCATAATTCCTTGTAGTTTTTACCTTTCTTCTAAAAATGCTCTCATGGGCTGAACTGTAACAACATATACGGGTTAATTTCTTTTTCTTTGTGCATTCAATTTAATTAAGTGGCCCACGTGGGGTATACAGTACTGTAGCATTCAGTTGTGTGACATAATGCAGCATTCAGCTTTGTTGGGCAATATTAAAACTTGGTCTTACTTTTGCTGAAGGAATGCTTTATAAGTATTGAGAAGAAGTTAATACCTGATATCATTACACCAACTTGCAATGTGTTGCATTTTGGGTGAATTTAGGGTAGTATCTTTTTTCTTTTCCCCTCTTTTCATTGATCAGAGGGTCAAGAACTTGCCTTGCCTTAACACTACCTGTAGGCAAGGCAGGAATTTCCATCAGCCCATATTTTCTATTTTCTCACATTAAAAGGAGTCACCTCATCTCAGTCACCTCACCTGCAAAGCAGGGCAAATCTTCTAGAGTTTGAGGAGCTGAAGACCACAAGGTGGACTAGCCCACCACCTCACACTCACTATCTCAGCTTCATTACCTGGGGCTGCAAGGTCTCTGCATACCATCTTTTTCTACCCACTAACTGTTCTCCAGCGCATTCATTGTGCTGCAGTCCTGTGCCAGGAGTAGTGCTTTGCACTGCTTGAGTTTCCTCATCAGCTTCTTTCAGTTGGAGGACTGAACAGATAAACCTCTTGCAGTGTACAAATTTTCTACTGCTGTTTCCCGTCTTCTGTGTATTTTATCCTCCCTCTTGCATCTCTGTCCTCCTTCAGAGTGGCTGTGGCAGAATGTGTCTCCATGTGAGCACTGACAGCCTAGATATGGCCAGAGGTTTCTAGGACTTCTCATGTCTCTGCTGCGGTTCAACAATCAATCTGTGAAACTCTGTCCTTCATTCATTCCTTTCCTACCCACAGCAACCAGCTCCAACTAGGGCAGGCAGGGAGCAGGACGCCTACCCAAGAGGATGTGCTTGCCATTCCTCCCTCTCTGTCATGCACAGAGGGGACGTTGGGTGATATGTGCAGCCAAAGGGGTATGCCTGTAGTAAGATCCCTCCAGGCTCCCACGATGCTCAATGGAAAGGAGATGTGGGTCCTTCTGCTTCCCCTCTGGCTTGGGCTGCTAGGAATACCTTTAGGCTGATGGGCCCAGGCCTAACTGCGTGTGGAAACTAGCTTCCAACGGGTATGCACTAATGGAGATCGCCCCATCCTTTCCCTGGCTGAGTCTCAGAGGTAGGGCTCATACAGAGTCCCTCTCAGAAATACCCCACGCGATGCCTGGTGGGCAGGTTCCTGTTACTTTCCAAGCACAGAATCAGACTAAGCCACCAAAGCTCCTATTACATTTTCTCTCGAAAAGAGCGGTGCCCTGGGAGTGACAGGGATCCAGTGCTGAGGAAGTGAGGGAGTGGAGGGAGGGAGCTGCCCGAGGGCTGTGGGGAAGTTCTGCAAGCTGTGGCTGTCGAGCGGTCGTCTGGAAGAGTTATGGCCGAATCAGTGGGATAATAGGTTCTCCTGAGCCTGAAACGCTTCTCTATGCAGGATAAGAGGTGATACGGGGCAGCTGGTTTACTTTCAACCAATTCTGTATTCAAATGAAGTCATGCTGCACGTGTCAGATAAAAGATGATTTATCTTGCGTGTCTCTATCACTGTCTGATAAAATGCAGTTTGAGAGGCTGGGGAAGAAATCTGCATTTTGGACGTACTGAGACAAATTCATCAATGGGAAAAATGTTTAATTGCAGTAAGCTAAATAGTGTTCCTCCTTTATTGTGATTGAAATTATCCTCCCCACCAGACTGCTGTTTCTGTTTGCTAATAGCATGGAGCTACTTGCAAAATGTGATAAATACTGCATATTACTTACAAATTTCAAACCATTTCTCTAACTGTGGAAATGTCTTTGCAATATACATCTGAATAGCAAAATGCCTGCAGGTAGCTAAGCAGGTAGATAGATGGACACCTGCTCAGTGTGCATTAGAGGCTTGTGCCAGCGTTGCCGCAGAAGGAAGCACTGCTAGGCAGGTAGCACCATATGCTCCTCAGGATGCCCTGAAATGCCTGTCATGTTGTAATGTTGCTTTCTGTGGTTTTTCTTTCAG
Seq C2 exon
TACTGTTCCACCGATCAGGCTGCTGCAGGCACAGATGCAGAACATGTACAACAGTTCTATAATCTTCTGACTGCCTCCATTGACATATCCAGAGGCTGGGCAGAAAAAATTCCAGGATTTACTGACCTCCCGAAAGAAGATCAGACATTACTCATAGAATCAGCTTTTTTGGAGCTGTTTGTACTAAGACTCTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013568:ENSGALT00000022087:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010425=Hormone_recep=PU(31.2=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]