GgaINT0099686 @ galGal3
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44731351-44732068:-
Coord C1 exon
chr2:44732045-44732068
Coord A exon
chr2:44731596-44732044
Coord C2 exon
chr2:44731351-44731595
Length
449 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
GACGTGTTTCTGAACAATAGAAG
3' ss Score
3.27
Exon sequences
Seq C1 exon
CTCTTAGGAGACATACGGACTAAG
Seq A exon
GTATAGAAATTATTTTCCTTACTCAGTAGTTTAATATTTTGATATTAACATGTTTGATGCAAAGTAAGTTAAAATGAAAGAATATGTTTTTAGACCTGATTCTTATATTCTTTAACAAGTATAAAGTTAAGTGAAATAACTAACTTTCAGTGCAATCTGTCATCCTATCACGCAATTTTATGAATTTTTACAAGTAAATTTAAGCTGAACGTTTCATCAAACGTATGTCTTCTTTCCATTTGCTTTGCTTATATATTTGGAATCCTATGCAAGCCATACATCTTTAAAATCTTTTTATTAACTTGCTTTGAACTGCTGAACAGTTAGAGCCATTTGTCAGTGCAAGGAGTAGGGCTTGCATCACTTCTTGGAAATGTTGGTGTTTCTACTGATAATGGATAATATTTCTTTGTAAATCGCTATTAACGTGACGTGTTTCTGAACAATAG
Seq C2 exon
AAGAAGCCTGTGCGAAGAAGATACGAGTCTTACGGGATGTACTCAGATGATGATGCCAACAGTGATGCATCAAGTGCCTGTTCAGAAAGGTCCTACAGCTCTAGGAACGGAAGCATACCGACATATATGAGACAGACAGAAGATGTGGCTGAAGTCCTAAATCGCTGTGCTAGCTCCAACTGGTCAGAGAGAAAAGAAGGCCTTCTGGGCCTGCAAAATTTATTAAAGAACCAGAGAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116403=TAN=PU(49.4=46.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTAGGAGACATACGGACTAAG
R:
GGTTCTTTAATAAATTTTGCAGGCCC
Band lengths:
256-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]