GgaINT0099692 @ galGal4
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45267257-45272362:-
Coord C1 exon
chr2:45272219-45272362
Coord A exon
chr2:45267401-45272218
Coord C2 exon
chr2:45267257-45267400
Length
4818 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TAATCTACATTTTCTTCTAGGCT
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTAAAAGTTGCAATTCTTAAATACATAGAGACTCTTGCACAACAGATGGATCCAGGGGATTTTGTAAATTCAAGTGAAACTAGGTTAGCAGTGTCTCGAATCATCACCTGGACCACAGAACCTAAAAGCTCAGATGTTAGGAAG
Seq A exon
GTATGTTTGTTAATGTGCACTTATGGTATATTCCAAGTGCCTTGGGCAGATTAAAAAAGCTATTGATAATTCATGTCTAAACAGAAAAATGTTTATTTTTCTTTAAAAACAATTTTATTGTTTCATGGAGACTATATACTTTTATGTCCTTCTGAGCAAATACAACTGAGGGTTGTGTCTAAAATATCAAAATTGCCGAATTCAAACTGTCAGAAAGTACATGTTTGGGAACATGTCAGTAAAATTTATAGTCTTGAAACTCCACGTTACGGTTGTATTTCACATCTGTTAATATATAGAGATCATATTTCATAAGACAGGGATTAACTTTTGTTTAGAGTGCTCTCTGGTATTAAGATATTTTGCATAGACATTTCCTGTACAGTTTCAATATTACTTCCAAAACCTTCTATAATAGTAGTAGCACATTCACAATAGCAGTGGTGACTACAGTAATGAACTCCTCACTTCAGCCTTGGTTGGATTTTTTGTGAAACAGAAAAGACTGGTAAGCAATCTTGTGTTCAGCCTTTGATGTTTTTAAATGAGGTTGTATCAAAGAATTGTTCTTGTAATGCTACAGTTCCAGTGCAAAAATCCCCTCTCCACATAACTCTTGTGAAGCAAAATTAATATTTGTGGGCATTCAGATATAGCAAGGATAAATAATAACCATGAGAAATTGACTAATGCAGCCTTCAGAAAAGAACTCTAGATAATTCTTGAAATTAGAGAGCAAATATCTTTTTAATCTTCTTTGCATATAGATGGAATAGATTTATTTGTTGTTGTTGTCAACATCCATCCTGTCTTAGCTGCTTTTATCAGTATGTTAACACTTCTTGAATGTTAACTAAAATATTTTGCTTATTCCTCATAAAGCGGAAGCATGTTTGACATAGACAAATAACTCTTCCGTTCATTTTTCCCTGTTTATTTCTGCAGTTGAAGTAAAAACAATTTATTTGTTTAGATTTCCTTAGCTTGATTCAATTCAGCTTGAGTTTTGGCAACTTTGTTTCTGAAATCAGGATCAAAACTTCCTTCAGGAGGGATGCTTTGTGGGAGTGAATTAATAGAACAAGATGGAGAGCTATCTCACAATGTATAATGCAAAACAAAGTAAAAGTAACTTTTGCCACTTCTTGGTATCTTGGCTGTTTATAATAACTATAGGAAAATTTATAATGCATATAACTCTATTTTTACCTTCCACTTCTAATATAACTTTCAGCATGAGGAAGCAGTAACAGATTATATCCTTTGGACTTTTCTCGCCTAGTTACCATGTTCTAGTGACATGCATAAGGCCATAAAACAGAAAGGGAACTGAAGCAGCACTATCTTCTGCATCGGTAAAGTTTTAGTACTGAGACACGTGGCGAGCTGTCTTATCTGATGGTTCATATCTTTAATAACCATTTTGATGTCAATAAGTAACTGAATCATGGAAAGAATTGGCTTTGAGTTTTATCATCTGGAACACTTTAATTATACGAAGCTTTCTCAGTTTATATTTTCTTTCCATAACAGACTTGTTAGGGGTTGCTAACTCCCAAAAGCCTTTAGTAAGTCTTGAAATAAAATTTTGCCAATGAATAGTCAAAAAAGTTATTCTGATCTTTTAAAATATTTCGTTCTGTTCACAGACTTGAAAACGTTAGCACGGTTGTTTAGTTTGGGACTTCATTCTGGAGTGTAAAATTCAAAGTTCCTCTACAATTAAAACTCTTCTGGGAAGAATTAAAATCTTAGAGTTCTTCTAAGTTAGAACAGTACAAAACATACTGCTCATTCTCACTCCTTTTAAAATGTGATCTGAGTGACCGGATGTGAAAATCTCAAGAGAGCAAGTTTATACTTGGAGGGGGAAAAAAGCCAAATACTCTAAAATGCCCCCCTTTTTTTTTTTTCTTCTCCTTTTTCTTTCTTTCTCTCTCTCTTTTTTTTTTTTTTTTTAAATAATAAGGAAGAAGGAAAACAGATGATTCCTTAATGAAACCCTTCTGTGAGTCGATTTCCATTTTGATACTTCAGGTTGAGCTTCTATGCAAACCCGATGGTACCAGTTTCTTCCCTGATACGACTGTAGACTGTCTTATTTTGTTATTCTGTTGGCAGCCTAAGTAGACACACTGTTAGACAGTGAGGATATGGATAACAGGACAGAGAAAAGAATGGTACTTTCCGAACCTTTGTTTGACGTTTTGTTTTAGTTTTGTATATATCAATTTATGTTAAAAGACGGACTAAAAGAAATAATGAGGGAAAAATGGAGCACCAAAGACAGGTTGTAGAGGGCATTCAGGCTGTTCACTTGAAGGGTAGACTGTTCGGGGAGGAGGGAATAAAAGTTCAAGAGAACAGCTGATCATGAGTGTGCAAAGACAGTTTGTGGCATTCTAACATGCTAGAATTTTCATCATTAAATTTAATACTAAGATGTGTGCTGGTATGTGTGCTCATACCTTGGCTTTCTACTTCTAATTAAAAAGTGCTACAGTTCATTGCTCTTGAAGCAAAGGAGGGAAATAAATGTCTAAAAGAATTTTCTAAACTACTTGCTTGAAGTATTTTTGGTGCTGAACCAAGTTGCCTGTCATTCTGGCTAGCATGAGGCACTGGTTCTCTCCAGTGCGTGGCAGACCTTGACGGTGTGTCACTTCTATTGAAACTAGATAAAGTTAGTTAATCTCACAACCAGAGTTTCATATTATAAAGAAACTGTTTAAAACTTAATAATCACTAGCCTTTCATTGCATGCCGTAAGTTAGTTGCATTGTTGACAATTTTGTTAGCCTGTCCAGTGAATATTCATCAAACTAAGTCACGCAGTCAACATTTCTTTAGCAGAGGGGAACTCAACTGGTATCCCCCATCATTCTGTAACATACTGTAGTGCTTTGTCAATATTTATTTACCTCTTGGCTGAGGTAAATAAATAAAATATGTGTATTAAAACTTGCTTTAGGATGAGGATGCTATTAAACATGAAATGGTAACATTGGGGGTGTGGAAGGTATAATCCAGTGCACTACAAACTCTAGTACTTAAGTTTTCATCTTTCAAACGTGTAGCCAATAAGAAGGTAGCTCCGAAAGTAATATCTCCTGTTCCTGGCCCACAGTGTCAGAGGGCAGATGTTGCTGGTATGACAGTAGGGGTTGAACCTTCCCACCAACACCCTGTGTGACAGATGGCAGCAGAGGGGCAGTCTGATCAAACGGCATCTGATATGGACGTACATCTGAAGCAAAAGTGTGGAATTAATTTCTTCCATGCAGAAAAAAAAAAATGCTTCTGTTGACTTTCATCGACACTTGCTGAACATTTCTTGACACCAAACAGTGGATGTGAGCAGAGTGAGACAGTGGGTGCTGTGTTTCTGCTGTGGCAACAGCAATGTGAAAGGCAAATCATGTTCTGATGATTTGGCCCTGGCCACACACAGCTGTCATACCACACAGTGAAAAACATCTTCATCAGTTCATCCATGTGAAATGACAGATTACAACGAGGGGTCTACATATGGAGCTGAATGTTGGCTTCAATGTTTTGGAAAAAGTGGTGGCTCTGTTGGAATGTCACAGTGTTTGAGCCATGTGGGTCCCACAGATGTTCACACAGGAACAGAATGAACACCGCATACGATTTTGTTGTGACCTGTTGAACCAATACAAGGCTGAAAGTGAAAATTTCCTGGATCACATCATTGGGGGTGAAGAGACGTGGTGTCACCACTACAGTCCAGAGTCAAAATGGCAGTCTTTGGTGTGGTGACATGTGAATTTCCCATCAGAGAAAAAGTTCAGGACACAGCCCTCAGTGGGTAAGAAGATGTGCAGTGTCCTTTGAAATAGGAAAAGGGTGATCCCTCTGGATTGCCTGGAACCCAGACAAACCATCAACTCTGGCTGCTGCATTACGACACTAAGCTGAAGGCTTGAATTTCCACAGTCCGTCCAGAGGAAAAGACAACCTTTCTCTTTCAACACCAGGCCTCATACCAGTTTGAAGACCATAGAGCACATTGCCGATCTTGGCTGGACTGTCCTACAGGATACTCTGGATTTGGTGCCTCCTGATTTCCATGTGTCTGGGATGATGAAAAATGGACTGCATGGGCAACAGTTTTCTGGCAACAGTGCTATCATAGCAGCTTTAAAACGGTCATCTCCACTGGTGCAGATTTTTTTGAGTGTGGCATGCAGGTTCTTATTCACCGCTGATAAAAATGCATAGCTACTAGTGGTGACTGTGTTGAAAAACAGTATTTTGTAGCTGAGAATTTGTTCTATTAAGTAGTGTTATTGTGCTCTTTGTATTAGTTGAAGTTTCCATGGAAATAAATAGGAGCTGTTACTTTTGGAGAGGCCTGCATCATCATGGTGCTTGAAAGCTAGTCTGTTGGTATCAAATGTCTTATCACTTGTGGAATTTAGGAGGAGGAGTTACAAACTTACTCCTGTTTGGTGTGTTCAGTTTCTCCTTTTTAAGATTTGTTCAACTTGACAAACCCTGTAGAAGCCATTTTGGTACTTCCTTCACTCCTTTTAGTAAACAGTTCTGGGGAGGGAGGGCTGAGGATCATGTATCTGAAAGACTGCTTATTAGGATGATTCTGAAAGGTTTAAGCTCATTGTTGTGTGCCTGAATTTATGAATATCTGAACCTCGATCTTAGCAGTACATATGAATTGCATTAGTTTATAACTGCTAATATCCTTATTCAAGTTTGCTTAATACTTATCTCACCTTTTGTGACCACCTGTCATTGTATCAACTCAACTTAGTGATTTTAATCTACATTTTCTTCTAG
Seq C2 exon
GCTGCACAGTCAGTACTCATTTCCCTTTTTGAACTTAATACTCCTGAGTTTACAATGCTGCTGGGTGCTTTACCAAAAACATTTCAGGATGGAGCCACAAAGCTTCTTCATAATCATCTCCGAAATACAGGCAACAGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.7=100)
A:
NA
C2:
PF123483=CLASP_N=PD(15.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]