MmuINT0036767 @ mm10
Intron Retention
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113896642-113899599:+
Coord C1 exon
chr9:113896642-113896785
Coord A exon
chr9:113896786-113899455
Coord C2 exon
chr9:113899456-113899599
Length
2670 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CTACTGTTTGTTCTTTCCAGGCA
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTAAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAAGAGATTTTACAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACTTGGACGACAGAGCCCAAAAGCTCTGATGTTCGGAAG
Seq A exon
GTTTGTTTGAGTGGGATGGAGAGATATTTTAAGTATTTTTTTAAACTGCTCTTTTGTTAGCTACGAGCCTTGTGTTTATTGACACCACTGAGGACGTGCCTTCCCCTGTGCCTGTCCCTATCCTTTCCAGCAGTCCCTACAATCCGTGACAATCAACACTTGCCTATGTGGACATTGACCTTTTGTTTTGTTTTGCCTTCCAAGTTCTCACTCCTGTGCCCAGTGATTTGCTAACTGCCTCCTTTCTTAAAGAAGTTCTGTTCTTAGAGCTAATGTCTGCATTGCTTTTCATGTTCTGGAGTTTTGTCTTAGAGTTTATTGTCTTGATTTTCATTTTCTTGAGTTATGGTGTTTTGAGACAGTCTTACATACCCTGGGCTAGCCTGGAACTCTTACATACCCTGGGCTAGCCTGGAACTTACTCTAGCAGATGACATTGAAGTCCTGGTCTTCCTGCCTCAACCTCCTGGGTATCAAGAATTCTGCCACATCCATCTTGCCTAGCTTGAGCTTTTAAATATGTCTTGTTTAGTATATGTTAATAGTTAGTGTATATGCTAATATTTTTAACATTTCTGCCTAGGGCTTATGGCTAGTATTTTCTATTGACTCAAAAATATGTAAGTTGTTTATGCTAGGAAATTACTCCATTGATAAAGGACGTAAGAACTCGAGTTTATATTCCTAGCACCTACATTATAAAAAATCGGGCATGGTAGCACATGCTTGTAATCTGGGTGCTGGAAAGGTGGCAGATTGAAGGCAATTGCTAGGGTTCACTAGCCAGCTAAGCTTTCCTTGTCATTGAACTTCCAGTTGAGTGATGGATGATCTCAAAAACTAAAGGGGAGTTGGGGATATTGGGACACACCTTTAACCCCAACACTCGAGAGGCTGAGGCAGGCAGATCTCTGAGTTAAAGCTAGCCTGACCTTTGGCCTCACATGTGGACACACTTTAGCACGTGTATATATACATGCACAGCTGCACACATGGACACAAGCACATGTATGTACCATAAAACAAAAAAGAAAATACACTAAATTGAATAAAAGTGAAGACATGGCATAATAAAACTCGGAGACGCAGCAGAAGCTGCATCTTGAAGAGAGCTCAGGGTACATAGCCGTATGTGCAGTCAAACACCCATGCATACGGTAGTCGGTGAATAAGATAGAAGCTAGGCTGGCACACACCTTTAATCCCAACAGCTCAGAAGATAAAGGCAGGTCTACTTAGTGTGTTTCAGACCAGCCAGTACTACAGAGTGAGACCTCTTTTCAAAGGAAAAAAACAACAACAAAGAAAACTGCGACTGACTGCACCCAACAGTGCTGTGTGACCCGCTGCCTGGTGCTTCCACTTACCTGAGAATGACCTCTGCCCTTGTGCTGGGAGCCAGAGTAAACCCTTCTGCCCTTCAGTTGCTTTGTCAGATACTTTATAACGGCAACTAATTCAGAGCTTGTAATAAGAGGAAACATTTAAATCGGTTATCTAATCAACCATCAAAAGACAGTGAGTCAAAAGGCAAAGCAAACAGAAATTTGTAGCTGAGAATATGGAAGAAAAGCAGAGACCATACATGGTGTTGCCCAAACCTCTAATCCAGCTCTTAGGAGGCAGAGGTGGGCAGATTTCTATGGATTCAAGGCCAGCCTGCTCTACATAGTGAGTTCCAGGACAGCCAGGACTTTGTACAAAGGCCTGGTGGGGTGAGGTGCAGCAGGGCTGGTGAGGTGTCCAGCACTCACGAGACCCTCATGGCAGCTCACAAGTGGCTGTGATCCTACATACCAGGAGACTGTTGAGTAGTGTTGTGTTATCTGAATACAGCATGCTTTAACCACTCTACTGTTGTATAGTGAGACTCTAAACATAGAACACCGAGGTCTTCATAGGTGAGATCAGAAACAGTCCAGAACAAGGTGTGTGCACTGGACATGGTCCTGTCACTGTGCTTCATTTCGTCCTATATTCTAAATGATTTGATTTTACTTTAGATTCTTCAAAATACCTGACTAACCTTATCTTGAGATTAACTGTAGACTTTTAGATTAGCTGCTTAAGAAAAGACTAGATCTTGCTAACACTTAAGGAGCAGAGGTGGGAGGGTCACAAACTCACAGCCTTCAGGACTACATAGTACAGTCATGCTCTGTTTTGTTTTGTTGGTTGGCTTTTTTGTTTTTCCCCTTCTGCTGTTTTTATTTTTTAATTATCATACGAAGTAACATGTTTCCATATGGCATTATCATGTGTACTTTGGTTTTGTTAATCTTCCCCTCTTCCCATTCCTACCCTTACCCTGTGTTGTCTGCTGCCAATGTATTTTTCAATATTAAGAATGCTTAATTTTAGCATTAAGTCACTGTCCTTTATGTCCTTTATAGGGAAACCTAAAACAGTAATGTGTGTTGACGGGATAACCCTGCAATGTTTGTCATGTTACACTTTCATAGTCCCTTTTTAACTTTAGAAAATAAATGGTAGTTGAAAGGGTTTTATCCTCCCAAAAAGAAAGAAGTTATGAAAGTTAAGGCTTGACCATCACATTTCCTTCTCCATGGGAGAGATTGTCGAACCCTGTGCCTGTGAGCAGAAACATAAGAAGAAACGGACACGCCTGCGCAGCCAGGATGCGTCTCACCTACTGTTTGTTCTTTCCAG
Seq C2 exon
GCAGCGCAGTCAGTGCTGATTTCTTTATTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTTACCAAAAACTTTCCAGGATGGTGCTACTAAACTTCTTCACAATCACCTCCGGAACACTGGCAATGGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392:ENSMUST00000111838:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.7=100)
A:
NA
C2:
PF123483=CLASP_N=PD(15.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types