RnoINT0036800 @ rn6
Intron Retention
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122158247-122161182:+
Coord C1 exon
chr8:122158247-122158390
Coord A exon
chr8:122158391-122161038
Coord C2 exon
chr8:122161039-122161182
Length
2648 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ACCCCTTTGTTCCTTTGTAGGCA
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTGAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACCTGGACGACAGAGCCCAAAAGCTCTGATGTTCGAAAG
Seq A exon
GTTTGTTTGAGTGGGATGGAGAGATAATTTTAGGTCTTTTTTCATTGATCTTTTCTTAGACACAAGCGTTGTGTTTATCATTCACCATCAGTGAGAACCTGGCCTTCCCTGTGCCTCGTTCACACCCTTTCCAGCTGTCCCTTCGACACAACCATCCGTACTTGCTGCCGTGCAGTCTGCTTTTGCTTTCTTAAAGTCTGCATTGCTTTTCATGTGCTCTAGTTCTATCTTAGAGTTAACTGTCTATCTTGATTTTCATTTCCTTGAGTTATGGTCTTTTAAGACAGTCTTATATAACCTGGGCTAGCCTGGAACTCACTCTAGCAGATGACCTTGAAGTCCTGGTCTTCCTGCCTCAACCTCCCAGGTACCAAGAGTTCTGCCACATCATGCCTAGCTTGACTGAGCTTTTAAACATGTCTTGTTTGGTATATGTTAATATTGTTAGTATATGAATATTTTTAACATTTCTGCCAAGGGCTTATGGCTAGTATTTTCTGTTGACTCAAAAATATATAACTTGTTTGTGCTAGGAAAATGACTCCATTGATAAAGTATGTAAGAACTGAGTTTATATTCCTAGCACCTACATTATAAAAAAATCAGGCATGGTAGCACATGCCTGTAATCTGGGTGCTGGGAAGGTGGCAGATACAAGAAAAGTGCTAGGGTTCACTGGCCAGCTAATCTTTCCTAGTCATTGAACTCCTAGTTCAGTGACAGATCTCAGAAACTAAAGGGGAGTTGGGGACGGTGGTGCACACCTTTAATCCCAACACTGAGAGGCTGAAGCAGGCAGATCTCTGAGTTGAAGGCTACCCTGACCTTTGGCCTCACATGTGGACACACTTGAGTACACGTACAGATGCATGCACAGCATGGACACACACATGTATATACCACAAAACAGAACAGAAAGTACACTAAAGTAAATAAAAGTGAGGACATGGCATAATAAAACTAAGAGATACAGCAGAAGCTGCATCGTGAACAGAACTCAGGGTGCATAGATGTGTATGGAAACAAAACACTCACTCATACATGCGATGATCATGTGAATCAGATAGAAGCGAGGCTGGCACACACCTTAACTCAGAAGATGGAGGTGGTCTACCTAGTGTGTTTCCATCCAGCCAGTACTACAAAGTGAGACCTTTTCTCAAAGGAAAAAAACGGCAAAGAAAACTGCACCCTGACGCTGCTGTGTGACCAGCCACCTTGTGCTCCCACTTAACTGTCAGTTGTGAGCCAAAATAAACCCTTCTGTTCTTAAGTTGCTTTTGTCAGATACTTTGTGACAACAACTAATCCAGCGCTGGTAATAAATCAGTTATCTAATCAACCATCAATGACAGTGAGTCAAAAAGAGTAAAGCAAACCTGAAGCAAACAGAAATTTGTAGCTGAGAATATAGAAAACAGAGACCGCACATGGAGGCACATACCTTTAATCCAGCCCTCAGGAGGCAGAGGTGGGCAGGTTTCTATGGATTCAAGGCCAGCCTGATGTACATAGTGAGTTCCAGGACAGCCAGGGCTCTATACAAAGACCCTATCTCCAACAATAACAAGGGAGCAGCAGGACTGGTGAGATGTTCCAGCACCAAAGAGTCCTTGCTGCTCTTGTCAAAGACCCACATGGCAGCTCACAAATGGCTGTAATCCTCGTTCCTGGGGATCAGACAATGTCTGGCATCTGCAGGCTCTGCTTGCACTTGGTGCCCAGACATACATTCCAGGAGAGTGTTGAGTAGTGTTGCATTATCTGCATACAGCATGCTTTAGCTACTCTCCTGTTATATAGTCAGACTCTAAATGCAGAGTGCAGAGTTTTTCATAGATGGAGTCAGAAACGGTCCAGAACAAGGTGTGTGCACTGGACGTGGTCCTGTGGTTGAGCATCATCTCATCCACTAAATTATCTGATTTGACTTTAGATTTTACAGAACACCTGACTAACCTTATCTTGAGATTAACTGTAGACTTTTTAGATTAGCTACTTAAGAAAAGACTAGGTCTTGCTAGTTAAAGAATCCTAAGAGCCAGGCCTGGTGGTGTGTACCTGTAATCCTAACACCTAAAGCAGAGGTGGGAGGGTCGCAGACTCAAAGGCCTTCAGGACTCCATAGTACAGTCATGCTCTGTTTTGTTTTGTTGGTTGTTTGGTTGGCTTTTTTGTCGTTGTTTTTTCCTTCTTATGCTAACCTTATTTTTAATTATCATACAAAGTAGTATGTTTTTATATGGCATTGTCATGTGTGCTTGGGTTTTGTTAATTCCCCCTCTTCCCATTCCTGCCCTTACCCCTGTGTTGTCTGCTGCCCATGTCTTTTTCCCATATTGAGAAAGTTTAAGTTTTGTCCTTTATGATCATTTATGGGGAAACATAAAACAGTAGTATATGTTGTCACAGTAGTGTATGGAATAACCCTGCAATGTTTGTCGTTACCCTCAGAGTCCCTTCCTTACTTTAGAAAATAAAAGGTAGTTTTTATCCTCTCAAAGAGAAAGAAGTTATGAAAGTCAAGGCTTGACCATCACATTTCCTGCTCCGTGGGAGAGAGGGTGGAATCCTGTGCTGTCGAAAGGATGCCCTGGAGAGCCAGCATGCAGCTCACTTAACTTTTGTACCCCTTTGTTCCTTTGTAG
Seq C2 exon
GCAGCACAGTCGGTGCTGATTTCTTTGTTTGAACTCAATACCCCAGAGTTTACAATGTTACTAGGAGCTTTACCAAAAACTTTCCAGGATGGTGCTACTAAACTTCTTCACAATCACCTTCGAAACACTGGCAATGGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161:ENSRNOT00000012545:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.7=100)
A:
NA
C2:
PF123483=CLASP_N=PD(15.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]