GgaINT0100232 @ galGal3
Intron Retention
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9933872-9935407:-
Coord C1 exon
chr2:9935298-9935407
Coord A exon
chr2:9933975-9935297
Coord C2 exon
chr2:9933872-9933974
Length
1323 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTGCTTGATTCCTTTTAGTAC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAGCCTCCTCGTGACTGGTTCCCACATATCAAGGATGCAAACAATGACACAGCTTACATCGAG
Seq A exon
GTGAGTTAATGAAGACTCGTCTTCTCTTTGAATCATTGCATATGGCACTTCTGGATTAGGTAAACATAATTATTCATTTGCTAGTCACAGAAGCGAAGAACATCCTGTTTTAGTCTGTTAGTAAGTAATATTTTCTAATAAATTACACTGTAGATTGATTTCAGAAAAGTTAATGAAATGTTAAATTGTATTTCAGGAGTTTCTAACATTGATGTTTTATGTCATCTACGCAACTGTCACAACATTACATTCAATTTGCCTTGACCAGGCTAGGTCTCGTTCACAATGTGTACTTGCCCATCAGCACTGAGATGTATAGACAGCAAGTTTCACATGGAAGCTTCAGTTCTCATATCTCAGCCTTCAGACCCTTTGAAAAAGAAGGAACTTCTTGTTCAAAAGCTTGTCTGTGACATACTGCTTTGTGAGTCACACTCTCCCCATAAGACCAGCATCAAGAAGGGAAAATTAGCAATGCTGTTAGGCTTAATTTTTCTCTTTTATTATTTTTCCATTCTTTTCTTCCACTTCTGTGTAAATTTGGATGTATTGAATTCAGTGATGTTAACGCTGAATTTAAATGACTATTCAAAGGGATAAGTCCAAGGGAATGGAGCAGAGATATTTCCTGTCTTTGCACAGTTAGAACACTGGGTTCAAGGAACAGAAAAAACTCCATTTTCAATCTTGTTGATTATCTTTGTCATGGAGAAAGTGAAATGTTTAATTTATTTTAATTTGGACTGATAGTTTTCAAACTCCTGCATAAAGTTGCAAAAATTACCATGATCATCAGCAGTCTTCTCCTACCTCTTTTCAATGCTGCTTTCTTATGATTCTCATACTCTTGCAGTCAAACAGCTTGTGTCTTTCAGAATGTATATAGATAGATTATTATAGAATCCAGCAGTGATTCTGTGATCAGCTCTTATTCTATGCCACATGTGCCACAGAGGGGAGTTCAGGTTTATTAGCTGGCCTATAAAATCTAACATGTTAACACTGAGCAGACTGAACTAGGTTATTCTCTGCCAAATTTAGCCAGTCCTTTAGCCATTAACATGGTCAGAATTCTTATAATCGTTTTTCCACAATGCCTGTATTCAAACAACAGATGGATTTCTAATATTGAGCCTGGGAAGCTTCAGTCAAGAAGAGAGATCCTGTCTGAAAATATCGTCCCAACCTTCTCAGTACTGCTGCCTTAAAATAGAATCATTAAATATGCCCAGTATTCACCTACATAAGAAACACTTTCAACTATTAAATAATGGAAGTGGGGCACCTATTACACATTGACTTTCTCTGCTTGATTCCTTTTAG
Seq C2 exon
TACAAAACATGTAAAGATGGAAGTGTGCTCGGTGTGACTGTAACGAGGATTGCGCTGCTGACGCACTGCCAAGCCCTGACCCAGGCATGTGGATACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652:ENSGALT00000010760:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAAGCTGCTGTGGTTT
R:
TGTGTATCCACATGCCTGGGT
Band lengths:
206-1529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]