MmuINT0049609 @ mm9
Intron Retention
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9567547-9567939:+
Coord C1 exon
chr13:9567547-9567656
Coord A exon
chr13:9567657-9567836
Coord C2 exon
chr13:9567837-9567939
Length
180 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TATTTTCTGTCTCGTTTCAGTAT
3' ss Score
10.18
Exon sequences
Seq C1 exon
GTTGGCCAAAGCTGCTATGGTTTGTCACAGAATCAAAACACCTCTCTAAACCTCCTCGGGATTGGTTTCCACACATCAAAGATGCAAATAATGACACAGCTTATATTGAG
Seq A exon
GTAAGGTGGATGCCTTCCACAGAGGCTGGGAGTGTATTACTGAAAAAGATGTGATTTCACCTCATTATACTAGTTGCAGTGTGGCTAGAACTCACACTGTCTCAATAACTAGAAGCTATTGAGTGGGGACCAGAAATTTATTTATCCAAACACCTTTCCATATTTTCTGTCTCGTTTCAG
Seq C2 exon
TATAAGACGTGTAAAGATGGAAGTGTTCTTGGTGTGACCGTGACGAGGATAGCGCTGCTGACACACTGTCAGGCACTCACACAGGCCTGCGGCTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-Dip2c:NM_001081426:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(14.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCAAAGCTGCTATGGT
R:
CCGCAGGCCTGTGTGAGT
Band lengths:
202-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: