HsaINT0048152 @ hg19
Intron Retention
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:435931-436313:-
Coord C1 exon
chr10:436204-436313
Coord A exon
chr10:436034-436203
Coord C2 exon
chr10:435931-436033
Length
170 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CACGCTTTGTCTCGTTTCAGTAC
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTTGGCCAAAGCTGCTGTGGTTTGTCACAGAGTCTAAACATCTCTCCAAACCGCCCCGAGACTGGTTCCCACACATTAAAGATGCCAATAACGACACTGCGTATATTGAG
Seq A exon
GTGAGTCAGCCTTGGCCTCCTCCACTGGCCCTGAGTGTGGCCTTGGCACTAACGTGTGTTTCTGACGGTTACACGAGTGCCAAAATTCAGGGACTTGGAGAACCTCAAGTAACCAGAAAAACTGCCGTGACCTGTCAGCCCCACTTCCCTCACGCTTTGTCTCGTTTCAG
Seq C2 exon
TACAAGACGTGTAAGGATGGCAGTGTGCTGGGTGTGACGGTGACGAGGACTGCGCTGCTGACACACTGCCAGGCCCTGACGCAGGCGTGTGGCTACACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-DIP2C:NM_014974:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCTGCTGTGGTTTGTCAC
R:
GTGTAGCCACACGCCTGC
Band lengths:
202-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)