GgaINT0101088 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NTA2]
Coordinates
chr2:30669700-30670650:+
Coord C1 exon
chr2:30669700-30669731
Coord A exon
chr2:30669732-30670506
Coord C2 exon
chr2:30670507-30670650
Length
775 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGA
5' ss Score
6.99
3' ss Seq
CATGTTTTCTGTACATTCAGGAA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTCCATCCGGAAAGAATGACGTATGCTCCTAG
Seq A exon
GTATGAAATCTGATGACGTCTGCCAGGGTAAGTATGTTTGAGAGTGGCTTGTATGTAAATGCAAGGAGAAAAAAAAAAAAGAGAGAGAGATTTAAGAAGTAGACAAAGAACTTAGAAAACTGGGTGATTGCCCAGAATTTGAAATCAACTCCTGTGGCCATTCCCAGACTGTTCTGCTGGTGAGAGTTTACTAAGAGGTGGTTTGTTGAGACATGAATTGCGGCATATTTGGAGATACGTGCATGTGATTTCTTTTTTAAAATTCAGTATCCCTTCTTGAAAAAATCTGTCTTCAGCAAAGATTCAATAGTGGATATTAATCTGATCTTATCTCAGTTACTTCCTAGTTGTACTGTTTTAATTTTCTGGTCCTAAGTGGTGGTCTCATAGACCTGATCCTTCACACCACAGCATCACAGTTCTTACCCATTTAGATGCCTTCTGAGAAAAACTGAGAAAGTAGTTTTTCTGTCCTGGGTGTTTATTGTGCCCAAGTGCCCTGGCTCTACAAGACAGCATTGCCTACATTTACTGACTTCTTCGTTACTGAAGAAGTCCTTCTCATTCAAAAGCTGCCGTTTTCTGTCATGTGGTCTCTATCCCATTGAGAAACTGATCACCATCTGGCTACTCTTTTTGACAGCAATCCTGACACTGTCCTTAATGAAACTGCTTAGGCCACCATTATCAGATTTCAAGTTTAAGACTAGTGAGGGCTTAAAGTCTACATCAGGGAACATTTTTTTATTAAAGAACATGTTTTCTGTACATTCAG
Seq C2 exon
GAATGTTGTGGATGCAGAGCATAGCTCAAGATATGTGGAAGGCAAAGGAATGGACTTAGTAAAGTCATACAAAGAAATCAGTCCAACCACTCCTTTGTTTTTCATTCCATCTCCAGGAGTGAACCCATTTGAAGACATGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906:ENSGALT00000017738:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(3.6=90.9)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]