MmuINT0050715 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119153932-119155444:-
Coord C1 exon
chr12:119155251-119155444
Coord A exon
chr12:119154081-119155250
Coord C2 exon
chr12:119153932-119154080
Length
1170 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTTGTTCTTTTCTTAAACAGGAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GCAGTCGCCCTCATGGAGGAATTCCGAGGCTTAGACAGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAATGGGTAGAATCAGAGTGTCCTGAAAAAGAAAAGTTACCGCAAGAATGGAAGAAGAAAAGTTTAATACAGAAACTGATTATTTTGAGAGCCGTGCGGCCTGACAGGATGACGTATGCCCTGAG
Seq A exon
GTGAGCAATGTGCCTTTTCAGCAATGCAGATTATTATGGCAGATGCTGGGTTCTAGGACTGAGGAGAAATCTCGCTAAGATCTCATTTCTAAAATCCCTGTTACTGTTAAATGTGGCTAACCACTCAATGGTGAGCTGGTTTATATGCAGACTCCGCACATCCTTCCAAACAGCTGGATGCTGAGTTTGAGGGATGAGGATCTGTGCTGATGCTTGTGGAAGGTCTGGGTATCAGCAGAGCGGTGTGGCTGGGAGCATGGATGGTCGGCTCCCATCACCTCTGTTACTAGCTGTATGTTGGCTCGGAGGGTTTTCCCTCTCAAACAAAAAGCAAGCTAACTTCACGGAGCAACTCATGGCCCTGTAACTTTACAGTCACCACACTTTAAAAGCAGAAACCACAAACTACAGGGTGGTTTCAGGGCCCTTTCCTCTGCCCTCTTGGCCTCTAAATAGTAACATGCTGTTCGATTCACACCACTTCTCTTTGAATTTACCTTCCAAAGTGTTCTCAGCTTCATTCCCTGTGAGCTGTATTTCTTCCACAGCATCCATGTGCCTTGGGGCTCTTCCTTTGCTTTGTCTAGTTTGACCGATTTTTCCCTCTGCAGAGGCCTCTGTGGAGCCCTTCCTTACGATTCATTCTGCTTCCTAGTACTTGCTTTCCACTAGATCTGATGCTACTGGAAAATAACCCCTGCTTAATTGCACTCCCCTGTTAGAAACACCACCACCCCAAAGCATTTGTATATTCATGGGAAGCCCAGCAGGCTGGAAAATTGCACTGTGGCAAATCTAATGAACTGTTAATAAGTAATGGAGGAATGCGGCAGGCAGGAGGTTCGGGGGCTACAAAGCCATTTGTAGACAGCTGATGTTGCATAGAAGAGGACCCCAAAATGCGATGGATGTAGGCCTCCAAATGTCAGTGTCTCAAGTCAGAGGCAATTTCAGCGATCACCACCTGCATAAATCTACTTGGATTCCTGAGGCTCCCCTAAGAACAACACCTCTTAACAAATACTGTTTGTTCCTTTCTTGTACATCAAATGAAGTTTACCCAAGCAGTGACACTTTTCAAGTTGAAAACACAGGTTTTTATTTGTTGGAAGAGGGTTGCTGTTGTTTTTGTTGTGTTCCGGTTCTGCCTGTTGTTCTTTTCTTAAACAG
Seq C2 exon
GAATTTCGTAGAAGAGAAACTAGGAGCAAAGTATGTGGAGAGGACTAGATTGGACCTGGGCAAAGCATTTGAAGAAAGCAGCCCGAGCACCCCGGTGTTCTTCATCCTGTCTCCAGGTGTGGATGCCCTTAAAGACTTAGAGGTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:71
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCGCCCTCATGGAG
R:
GAGCACCTCTAAGTCTTTAAGGGC
Band lengths:
342-1512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: