RnoINT0048705 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145817681-145819195:-
Coord C1 exon
chr6:145819002-145819195
Coord A exon
chr6:145817830-145819001
Coord C2 exon
chr6:145817681-145817829
Length
1172 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CATGTTCTTTTCTTAAACAGAAA
3' ss Score
9.76
Exon sequences
Seq C1 exon
GCAGTCGCCCTCATGGAGGAATTCCGAGGCCTAGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAATGGGTAGAGTCCGAGTGCCCGGAAAAAGAAAAGTTACCGCAAGAATGGAAGAAGAAAAGTTTAATACAGAAACTGATTATTTTGAGAGCAGTGCGGCCTGACAGGATGACATATGCCCTGAG
Seq A exon
GTGAGCAGTGTGCCTCTTCAGCAATGCAGATTAGCACAGAAGATGGACTGAGGAGAAATCCTGCTAGGATCCCCTTTCTATGATCCCTGTTACTGTTAAAACTGGCTAACCACTCAACGGTGAACCATTGAAGGATGGAGACTCACATCCTTCCAAACAGCTGAATTCTGAATTTGAGTTCGAGGGATGGGGATCTGGGCTGCTATTTGTGGAAGGTCTGGATATCAGCAGATCAGCACAGTGGGAGCAGAGCATGGATGGTCTGTCTATTCCCATCACCTCTGTTACTGGCTGTACGTTGGCTCTGAAGGCTGGACCTCTCAAACAGAAAGCAAGCTACCTTCACGGAGCCGCTCATGGCCCTGTAATTTTATGGTCACCACACTTTAAAAGCAGAAACCACCAACCATAGGGCAGTTCCAGGGCCCTTTCCTCTGCCCTCTTGGCCTCTAGATAGTAACACACTGTTTAATTCACCCCAGTCTTCTCTTAATTTGAATTCGCCAACCAAGGTGTTGTTCCCAGCTCCATGCCCTGTGTGCTGCGTTTCTTCCTCAGCATCCACATGCCTCTGGGCTCTCTTCCTTTGCTTTGTCTAGTTTGACCAATTTTCCCCTCTGCAATGGCCTCTGTGGAACACTGCTTTACAAGTTCACTCTGCTTCGCAGTCCTTGCTTTCTGCTAGGTCTGATGCTCCTGGAAAATAACCCCTGCTTAATTGCATTCCCCTGTGGGAAACACCCCTCCAAAGCATTTGTATATTCACGGGAAGCCCAGCAGGCTGGAAAATTGCACTGTGGCAAATCTAATGAACTGTTAATAAGTAATGGAGGAATGCGGCAGGAGATTTGGGGGCTGCAGAGCCATATGTGGACAGCTGATGGTGCCCAGAAAAGGACCCCCAAACGCAGCGTAGGCTTCCGAATTTCAGCAGGGGCAATTTCAGTGATGCACTGCCTAAAAAAAATCTATTCGGATTCCCGCAGCTCCCCTAAGAAAGACAACTGTTACCCTAAACACAGTTCGTCCCTTTCTTGTGCCTCAAATGAAGTGTACCCAAGGAGGCGACAGTTCTCAAGTCGAAAACACAGGTTTCTATTTGTCGGGAGAGGGTGGCTGTCTTTTTTTTTTTTTTGTTCTGTTCCCGCTTTGCATGTTCTTTTCTTAAACAG
Seq C2 exon
AAATTTTGTAGAGGAGAAGCTAGGTACGAAGTACGTGGAGAGAACGAGATTGGATCTGGGTAAAGCATTTGGAGAAAGCAGCCCAGGCACCCCAGTGTTTTTCATCCTGTCCCCAGGCGTTGATGCCCTTAAAGACTTAGAGGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCGCCCTCATGGAG
R:
AAGCACCTCTAAGTCTTTAAGGGC
Band lengths:
342-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]